BAC Information

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BAC

Clone NameMSMg01-096J17
Chromosome1 (Build37)
Map Location 187,269,882 - 187,269,998
singlet/doubletsinglet
Overlap genenone
Upstream geneEG433387, EG629032, LOC666714, Hlx1, Mosc1, Mosc2, LOC100039079, C130074G19Rik, Mark1, Iars2, Bpnt1, Eprs, 9630028B13Rik
Downstream geneLOC100039138, Slc30a10, 5033404E19Rik, LOC677785, Lyplal1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-096J17.T7 (MSMg01no096_j17.b1)MSMg01-096J17.TJ (MSMg01no096_j17.g1)
ACCAG313244AG313245
length730753
length of high quality
(start - end)
118 (78 - 195)61 (104 - 164)
definitionCHROMAT_FILE: MSMg01no096_j17.b1 PHD_FILE: MSMg01no096_j17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:01 2005CHROMAT_FILE: MSMg01no096_j17.g1 PHD_FILE: MSMg01no096_j17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAGTCATGTATTAAGATGGAATCTCCCAGGGTACTATCTTTTTT
TCTCCTCCTCTTTCGCTGTCGTTTCTCCCTCCTCTCTTTTCTTCCCTACT
CCAATTCTTCCCACCCTCAACTCCACTCCGTTGTTAATCTCAGTCTCAGG
GCTTTGACTTTAGATTCAGGTGAATTTCCAGATAACCCTCCTGGAGCTGG
CCCTTATCAGGTCCCAAACCTCATATTTCTGCCTAATTCCTCGTGGCTAT
CCAACACATATTGCCGAGATAGCCTCTTGTCTTTCTGCAGCAACTGACAT
CAGCATCACCCCTTATAGTTAGGTCAGACAGACGGCCCTTAATTCCTGCC
TGTTTCCCACTCTTTCCCCCACCAAAAAACTTGTTCCCTGTACAGTGTAC
TTCCAATCAACCCCACTCTGGCCCCTTACAGTCCCCTACAGTACTCCCTC
TCCTCCCTTACCCATTGCGCCATTAATCCACCCTCCCCTCATCCCCCGTA
TCCCTCGGCTCTCGTTCCTATCCCCGTATCTCCACCCAGACCACTCTACT
TACAATAACTTTCCCTACAGCCCGGGAACGAAGTACACCAACATCTCCCT
CGCCCGCCCCCTTTTGCCCCTCCCAACGCTTTCCCTTACCATGTCCTAAC
CATACATCACCTTCCTTGCCTCTCCCCCCC
TATATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTTTCCCAATTACCACCTTGTCTTTTGTCAGCGAACTGTGGCT
GACGATAAACAAGCCGAATAAACCCTTTCCTCCCCAACTTGCACTTGGTT
TTCTTTTTTTGCCATAGACGGTAGTAACCCTGACTAGGACAGACTGACAG
TAGATATACAGAAAACGTTCTTTCTAATAAGACAAGCTCATACTAATAAA
TTTATCTGTGTGGTTGGAGAGATGGCTCAGCAGTTAATAGAGTAACTGTT
CTTACAGATGATTCAGGCTGACACCCTAGCATCCACGTAGCGGCTCACAG
CTACCTGTATCTTTAGCTCTCGCGCCCCCTGGTGCTCTCGTCTGACTCTC
CCCCGGCCCTCGTTACTCCTGCGTCCCCCCAACATTAACGTGCAGGGAAT
ACCTTACACACTCCAGATAAATCCCCCATTTTTTCCTAATCTCTATCTCT
CCATATCGAACTCACTCCTGCTTGTTTCGCCGCTTGTTCGTTTGCTCGTT
CTGCCGCTTCTCCCTCTTTCTTTTTTCCCTATCCCCTATTCTCCCCCTCC
CCCCCCGTTTTCCTACCTTTCTTTTCCTTCTTTCCCGAGTTCCCCTCGCT
CTCCCCCTTCTCTTCCCCTCCTCCCCCTTTCCTCCCCACCGTTTATTATC
CCTCTTCCCTTTTCTCCCCTTCTCTCTCCCCCTTTCCTTCCCTCCCTCTT
CCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no096_j17.b1 MSMg01no096_j17.b1 CHROMAT_FILE:
MSMg01no096_j17.b1 PHD_FILE: MSMg01no096_j17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:53:01 2005
         (118 letters)



>mm_chr1_187269681_187270198
          Length = 518

 Score =  211 bits (109), Expect = 1e-59
 Identities = 115/117 (98%)
 Strand = Plus / Minus

                                                                       
Query: 2   ctcccagggtactatctttttttctcctcctctttcgctgtcgtttctccctcctctctt 61
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 318 ctcccagggtactatctttttttctcctcctctttcgctgttgtttctccctcctctctt 259

                                                                    
Query: 62  ttcttccctactccaattcttcccaccctcaactccactccgttgttaatctcagtc 118
           |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 258 ttcttccctactccaattcttcccaccctcaactccactctgttgttaatctcagtc 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 3
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 118
Length of database: 518
Length adjustment: 8
Effective length of query: 110
Effective length of database: 510
Effective search space:    56100
Effective search space used:    56100
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)