Query= MSMg01no096_o08.b1 MSMg01no096_o08.b1 CHROMAT_FILE:
MSMg01no096_o08.b1 PHD_FILE: MSMg01no096_o08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:53:25 2005
(249 letters)
>mm_chr1_42513519_42514167
Length = 649
Score = 346 bits (179), Expect = e-100
Identities = 238/269 (88%), Gaps = 20/269 (7%)
Strand = Plus / Plus
Query: 1 aagtctgagaaagcaggccaatgtgtttgaggccagctggagaatgtcttcaaacc---- 56
|||||||| ||||||||||||||||||||||||| ||| || |||||||||||||
Sbjct: 181 aagtctgaaaaagcaggccaatgtgtttgaggcctgctctaggatgtcttcaaacccaaa 240
Query: 57 caaaaaaaaa---------------aaaaaaaaa-cagaccggaattcctaaagctgact 100
|||||||||| ||||||||| |||||| ||||||||||||||||||
Sbjct: 241 caaaaaaaaaacaaaacaaacaaacaaaaaaaaaccagacctgaattcctaaagctgact 300
Query: 101 tctcttgactttcattctggtctgaaccacctactggccacacaaaagatatctggatac 160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tctcttgactttcattctggtctgaaccacctactggccacacaaaagatatctggatac 360
Query: 161 tgcagccacatatactcctggaaggttctgaggtagaattcaagccacaccattgcatag 220
||||||||||||||||||||||||| ||||||| |||||||||| || ||||||||||||
Sbjct: 361 tgcagccacatatactcctggaaggctctgaggcagaattcaagtcataccattgcatag 420
Query: 221 ttcccttgttcactcaaagtgaaaagcag 249
||||||||||||||||||||||||||||
Sbjct: 421 ctcccttgttcactcaaagtgaaaagcag 449
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space: 153600
Effective search space used: 153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no096_o08.g1 MSMg01no096_o08.g1 CHROMAT_FILE:
MSMg01no096_o08.g1 PHD_FILE: MSMg01no096_o08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:53:25 2005
(180 letters)
>mm_chr1_42683747_42684325
Length = 579
Score = 325 bits (168), Expect = 1e-93
Identities = 174/176 (98%), Gaps = 1/176 (0%)
Strand = Plus / Minus
Query: 1 tagagccccatctgcctacacagctcaatttttcctagagtggatgagacagagcaaggt 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 tagagccccatctgcctacacagctcaatttttcctagagtggatgagacagagcaaggc 316
Query: 61 tgtctagcagggaccgtgaagtcctcctgtgaaatttgaagaggacacactatgtcacta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 tgtctagcagggaccgtgaagtcctcctgtgaaatttgaagaggacacactatgtcacta 256
Query: 121 gcccttgaccttccctgatagtgcacaggcacactggcgctgatgcatatagttta 176
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 255 gcccttgaccttccctgatagtgcacaggcacactgg-gctgatgcatatagttta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 180
Length of database: 579
Length adjustment: 8
Effective length of query: 172
Effective length of database: 571
Effective search space: 98212
Effective search space used: 98212
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
