BAC Information

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BAC

Clone NameMSMg01-097L15
Chromosome1 (Build37)
Map Location 99,309,733 - 99,310,155
singlet/doubletsinglet
Overlap geneEG634346
Upstream geneGm1833, Slco4c1, EG329217, Slco6b1, LOC670708, LOC623430, Slco6c1, EG634331
Downstream geneD1Ertd622e, Hisppd1, Zh2c2, Pam, LOC100041823, LOC666153, LOC100040887
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-097L15.T7 (MSMg01no097_l15.b1)MSMg01-097L15.TJ (MSMg01no097_l15.g1)
ACCAG314085AG314086
length706692
length of high quality
(start - end)
291 (63 - 353)423 (55 - 477)
definitionCHROMAT_FILE: MSMg01no097_l15.b1 PHD_FILE: MSMg01no097_l15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:54:34 2005CHROMAT_FILE: MSMg01no097_l15.g1 PHD_FILE: MSMg01no097_l15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:54:34 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTCCAGAGAATCCGCGGAATTCACTGG
CTCTTCCGCTAAGCTAAATTCAAGTCTTCTAGCCTTAATTTGTTTTAGGT
ACTCATTCTGCCACAATGATAACAAATAGCTATTATCAAAGAGCCTAAAC
TTCAAAAACCAAGATTCTTGTCAAGGATGAATATCAAAAACAGTTATAAC
TTATTGGTTGGGGTGTGGTTTGGCACAGCTACTATGAAAAAAGAATGATG
TTACTCAAAAATAAAGAGCAGACCTACCATATGATCCAGCTACTTAATAC
ATAATAATAAAAACATTTATATTAATACCTGTAAGGATTCAGACAATGGC
TGATGGTCTTAGCCACTCTCACTCAGGCAGCACATGCTCATACAATCTTT
CACACCATGACCAATACAGAAAAAGTGAGAAAGTAATGGATCAGGCTTCC
ATAGTCCATGTTTAATGACCTAAGGACTTTTGCTTAGGCTCTAAGTCTTA
TAATTTGCAAAATATCCTAATATTTTTCTAGAAAATAAGCCCTTCTCATG
ATACTGACTTTAGAGCATACTGAAGACTATTTAAATTACAGTATTTATCC
AAAAAACAGTGACCATCATAACAACAAGTGCCATGAATCACATTAACCTA
GGTAACTATTATTTATTATCCTGACCAAATGAACGCTGTATATGTGTATG
CTGACC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCCTATTTATTCTAAGTATTAACTCCTTTCTTTTCAGTAGCCATTAC
TAATCTACTCTACTGCCTATAGATTAATTCATATGAGAAACAATTTGCCG
GTATGTTACCTAACCTATATATTTTATGCTTTACATTACTTGAAACATAT
TTAAAATGCATTTCCTCTTTTATATTCTCTATATATTGCAAAGTTATCAT
TAACTATTTTATATTATCTAAAAAATTCTGTGATCCTGAAAACAATCTGT
GTACTTAATGTGATGTGGGAATTCTGATATTTATTATTTTATACATGAAC
AGTAATCTTGCATTGCTTATATCATGTAGCTAATAATTCTTATACCATGA
ATATATATTCACACAGATAATGAATTATGAAGCCGCCTATAATTCTGCTT
TATTTGCATTCAAATGAGGACATTGTTATTCTTTAAACTATAAATGCCAT
GCGACTATCTTCGTATTTCATTTAATAGATCATTAGACTAAATATTTCAT
GCATGAACATAGCCATTTCTTTTTTATATTACATATCTCCTTTGATTACC
TTTCTTTTTTTCCATTTTTATTAGGTATTTAGCTCAATTTACTTTTCCAA
TGTTATACCATAAGTCCCTCATTACCCACCCACCTTCCTAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no097_l15.g1 MSMg01no097_l15.g1 CHROMAT_FILE:
MSMg01no097_l15.g1 PHD_FILE: MSMg01no097_l15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:54:34 2005
         (423 letters)



>mm_chr1_99309533_99310356
          Length = 824

 Score =  383 bits (198), Expect = e-110
 Identities = 369/434 (85%), Gaps = 23/434 (5%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctatttattctaagtattaactcctttcttttcagtagccattactaatctactctact 60
           |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct: 623 cctatttattctaagtattaactcctttcttttcagtagccattacaaatctacactact 564

                                                                       
Query: 61  gcctatagattaattcatatgagaaacaattt-gccggtatgttacctaacctatatatt 119
           ||||||||||||||||||| |||||||| ||| | | |||| |||||||||||||| |||
Sbjct: 563 gcctatagattaattcataggagaaacacttttgtctgtatattacctaacctatacatt 504

                                                                       
Query: 120 tt-atgctttacattacttgaaacatatttaaaatgcatttcctcttttatattctctat 178
           || ||| |||||||||||| |||||| |||||||||||||||||||| ||| ||||||||
Sbjct: 503 tttatgttttacattacttaaaacatgtttaaaatgcatttcctcttctatgttctctat 444

                                                                       
Query: 179 atattgcaaagttatcattaactattttatattatctaaaaaattctgtgatcctgaaaa 238
           ||||| ||| |  | |||||||||||||||||||||||||| ||| ||||| ||||||||
Sbjct: 443 atattccaaggccaacattaactattttatattatctaaaacattttgtgaacctgaaaa 384

                                                                       
Query: 239 caatctgtgtacttaatgtgatgtgggaattctgatatttattattttat--acatgaac 296
            |||||||||||   |||||||   ||||||||| |||||||||||  ||  || |||||
Sbjct: 383 taatctgtgtac---atgtgatacaggaattctggtatttattattacatgaac-tgaac 328

                                                                       
Query: 297 agtaatct-tgcattgcttatatca-tgtagctaataattcttataccatgaatatatat 354
           | || ||| | |||||||||||| | | |||||||||||||||| || ||||||||||||
Sbjct: 327 aatattctctccattgcttatattaat-tagctaataattcttaaactatgaatatatat 269

                                                                       
Query: 355 tcacacagataatgaa---tta---tgaagccgcctataattctgctttatttgcattca 408
           ||||| || |||||||   |||   || |      ||||| | || |||||||| |||||
Sbjct: 268 tcacataggtaatgaaacattaagttgta------tataactgtgttttatttggattca 215

                         
Query: 409 aatgaggacattgt 422
           |||| |||||||||
Sbjct: 214 aatggggacattgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 423
Length of database: 824
Length adjustment: 9
Effective length of query: 414
Effective length of database: 815
Effective search space:   337410
Effective search space used:   337410
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)