BAC Information

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BAC

Clone NameMSMg01-097N24
Chromosome1 (Build37)
Map Location 109,947,512 - 109,947,811
singlet/doubletsinglet
Overlap genenone
Upstream geneSerpinb3a, Serpinb3d, LOC100041276, Serpinb3b, EG666401, Serpinb3c, LOC666414, Serpinb11, Serpinb7, Serpinb2, Serpinb10, Serpinb8
Downstream geneLOC435640, EG626474
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-097N24.T7 (MSMg01no097_n24.b1)MSMg01-097N24.TJ (MSMg01no097_n24.g1)
ACCAG314196AG314197
length6731,192
length of high quality
(start - end)
298 (51 - 348)---
definitionCHROMAT_FILE: MSMg01no097_n24.b1 PHD_FILE: MSMg01no097_n24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:54:46 2005CHROMAT_FILE: MSMg01no097_n24.g1 PHD_FILE: MSMg01no097_n24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:54:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTACCAGTCTCCAGAGCATCCGCGGAATTCTTTACCATTACCTTTTTATA
TTGCATTACATCAGCATATTTCTATTCATCTAGACTTCAACTTTATTCAG
CTGTAAGACTATTACTATAATCTTGCTTTTAAATATTGTTACAAGAAGAA
TATTACATATTTCCCTTTATGTAGTATAAGAGTGTAGTCAATGACAATGG
CAAACATTATCATAACAAACACAGCAATGCTTGATCATATCTTCCATCCT
TTCTGTTTTCCATCTACCACAGCTTTTATCTGAGTAAAATATAATACAGT
TCAACAAAACATCCTGTCTCAATTAATTCATGTCTGGGAACAGCCAAACA
CAAACTACAAGATGACTCTTCTGACCAGAAAGAACTTTGCCTTGGCCAGA
AAAGAGACACATTAAATTACTGTATAAAGGAACCTTTTTCACTAACCTTA
GCGACGAGCAGGCAAACTTCTCCGATACATAAAAACAGCTATTTTCTTTT
CTCTTCCTCAGAAAAATACTCAGTGCTATGTAATCTCTACAAAGTAAGCT
TAGCTAAGGCCATGCATATGAGATTTTGTTTTGCTTACACAAAGGTGTTT
CTATCCATTAAACCTACTCTCTCTCAAGATGCTTTTCTAAGCGGCACAGG
CTCCTCCCACATATATACATGAC
AGAAGCGCAGCGGGGGGCAGCGGCGGCGACGAGCGGACGGGATCCCCACC
AACCACCCCGATTCCCCCTACTCCGAGGGTGACAAAACAAATGGTGAAAA
TGTGTATAGTCGCTTGACGATGTGTACACAAAACACACTGATCTTATGTC
AATGAAATCTTAGCGTATACATACTTCTCAACATTACAATAAAAAAACAA
CAAAAACGAGACATGTGTGGTGTGCTTTTGGCAACAAACTGTATAACAAC
GGATCATATGCTGTGCCGAAATTAGAACACATAAAAAACCGTTAACGGGC
GTGTCTTGTATTCACCTTCACAAACACAACTTTAACCGCGTAACCCGAAA
AAACATCATTGNAATTAACAATGTGTTGGTTGTGTCAAACCAAAACATTT
GGGCAAACACAAAAAATCATAATATGTGTTTGGGGTACTTGATAGTCGCA
ATACAAAAACAAAAACATACTCTATCTTGGCNACCTGCACATTGGCCGCG
TCTCTTACTCCTACCCTCTCCGCCACCCCTGCCTTACGCATTTATTCGCG
GGGTGGGGTGCGCTTAATNTCGCTTCACATTTTGTTTTACAACACCTACA
GCTCGGTGTATGGCCGCGGTGGTGTGAACANCGCGCGCCGCGCGACCATT
CCTCTTTATGCCCTTTCTTGGGCGAACGAAACACACACACACAACATACA
GCTGTGTGTTCTCGCGGCCCCATACAATTCTTATGGCGTGCGACGATGCT
TTACGCTAGAGATACGCGACGATCGTGGGTTCCTGGCGCGTGGTGGCACT
TACGTATGTTGTACCGACGACTCGACCGATCCCTTGTACCACTTTCGCCT
CCTCTCGTGTCTGTGTCCTATTGGTCCGGCGGGCGTTGTTAAAATAAATT
CTCGCAACAAACCCTTCTGCCATTACACAACTCAACTGTTGTTGGCTGTC
GTCTCCCCGACCCACNTACTCTCTTATCCACTCCCTGTCGGTGTCTCTTC
TCTCTATTGTGTTGTCTCCACGCCCGCCTCGCGCGTGTCGCCCGCGCCGT
TCCGTTATGTTTCCGCGAACTGGCTGCGGCANAACTGTGCGCGCTGTCAG
CCACTCGGGGGCGTTCGTACACACGTAACAACACGCGCGTACGGCGCTAT
CACCGCGTTGTCGTGCCCCGCTGCTCGAACGCGCGTGTTACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no097_n24.b1 MSMg01no097_n24.b1 CHROMAT_FILE:
MSMg01no097_n24.b1 PHD_FILE: MSMg01no097_n24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:54:46 2005
         (298 letters)



>mm_chr1_109947312_109948011
          Length = 700

 Score =  507 bits (262), Expect = e-148
 Identities = 290/302 (96%), Gaps = 6/302 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgcattacatcagcatatttctattcatctagacttcaactttattcagctgtaagac- 59
           |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| 
Sbjct: 500 ttgcattacatcagcatatttctattcatctagactccaattttattcagctgtaagact 441

                                                                       
Query: 60  ---tattactataatcttgcttttaaatattgttacaagaagaatattacatatttccct 116
              ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 440 atttattactataatcttgcttttaaatattgttacaaaaagaatattacatatttccct 381

                                                                       
Query: 117 ttatgtagtataagagtgtagtcaatgacaatggcaaacattatcataacaaacacagca 176
           |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 380 ttatgtagtat--gagtgtagtcaatgacaatggcaaacattatcataacaaacacagct 323

                                                                       
Query: 177 atgcttgatcatatcttccatcctttctgttttccatctaccacagcttttatctgagta 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 atgcttgatcatatcttccatcctttctgttttccatctaccacagcttttatctgagta 263

                                                                       
Query: 237 aaatataatacagttcaacaaaacatcctgtctcaattaattcatgtctgggaacagcca 296
           |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 aaatataatagagctcaacaaaacatcctgtctcaattaattcatgtctgggaacagcca 203

             
Query: 297 aa 298
           ||
Sbjct: 202 aa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 298
Length of database: 700
Length adjustment: 9
Effective length of query: 289
Effective length of database: 691
Effective search space:   199699
Effective search space used:   199699
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)