BAC Information

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BAC

Clone NameMSMg01-098A01
Chromosome1 (Build37)
Map Location 132,027,981 - 132,028,568
singlet/doubletsinglet
Overlap geneThsd7b
Upstream geneLOC100042732, LOC100042745, LOC100042740
Downstream geneDaf2, Cd55, Zp3r, C4bp, C4bp-ps1, Pfkfb2, Yod1, AA986860, Fcamr, Pigr, Faim3, Il24, Il20, Il19, Il10, Mapkapk2, Dyrk3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-098A01.T7 (MSMg01no098_a01.b1)MSMg01-098A01.TJ (MSMg01no098_a01.g1)
ACCAG314294AG314295
length673762
length of high quality
(start - end)
595 (18 - 612)238 (133 - 370)
definitionCHROMAT_FILE: MSMg01no098_a01.b1 PHD_FILE: MSMg01no098_a01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:54:57 2005CHROMAT_FILE: MSMg01no098_a01.g1 PHD_FILE: MSMg01no098_a01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:54:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTACCTATACAAAGAGGATCCGCGGAATTCATCATAGCAAAAATGAGCAT
TCAGTTTTAGAAGAATCTCAGTGATGAGTTTCAGTATGTCTTTTAAATCA
AAAGCCACATCTCCTACTGTGCCCAGGAGTGCATATATTATTTCATTTAA
TGCTCAACCCAAAGCATGCTTAGCTCCTTTCTTCATTGGTAAGTAAAGGA
AATGACACAGAAGTAAAATAACAAATCAAAGATGATACTGTTAGCTGTGG
ATCAAATATTTGAAATTAAGCCTAATTCAAAAGCATACATCTGTGTTTCT
TCACATTCACCTGTTTGCAAATGTAGTAAGCTATTATAATCTGATGAAAA
GTCTCCATTTCTATGCATTTGAGTGCTCTGAAGTTCACACCTGTCATCTG
GGTTTTGTTTTTCCACCCTGTAGTGAGCTGCTCCCTCCTAAGTATAGTGG
TCCAATTGTGGAGCTTCTAGCTTTAGAGAACACTCATTCTAAGCTTCTTG
AAGTCAAACCATCCCAATGTTCTTCATTGCCATTTCTAGGCTACATGGAC
AGGAAGGAGAGATGGCTTATATGGGGGTAGGGGTGGGATCTAGGTACTTC
TCACCCTGAGGTTCTGCTTCTGCTGCCATCACTCCTGTAGGCTTACATTT
TTAACAAACTGTTCTATAAACGT
CCCCCCCCCCCCCCCCCCCCCCCCCNCCCCNCCCCCCCCTTTCCCCCTTT
TTTTCCTTCTCTATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTCCCAAGACTT
TTATCATGAATGGGTGTTGGATTTTGCCAAATGCTTTCTCAGCTTCTAAT
GACATGGTCATGTGGTTTTTGTCTTTGAGTTTGTTTATATAATGGATTAC
ATTGAAGGATTTTCTTTTTTTTTTTTTTTTTTTTTTTTCAGCTCGGGGGT
TTCCTTTTTATTGATGTGCCTCCTACCTCCCCCATCCAATGTCAATCCCT
TCCACCTACCCCCCAAAAAGAAAATAGTGAAAGGAAGGGATTATTGGGGT
TCTGAGCCCGATGGGCAGTTAGAAAGGGAATAGAAACCAAAACAATCATC
GGATGCGACAAAAATCGACAATCAAGAAGTCTAAATCAAAGTGGGAATGG
AGGGTAAACAAGGGGAAAGAGAGATGTATGGACGCTGTATCTACCATTAC
CCCTCCTGCTGAGAGGAACTGGAGAGACAGCCTCAAACATTAATTGCAGG
TCCTCAAAAAAGGACGTGGTGTTTGACCCTGAATGACGAACTGGATGTCA
AGGAAGGAGCGCCCCCTTCTCTTCGTAAAATGGAACCCCCCACCTCAGGG
AAATGCAGTTTCCCAGACCATAAAACGTTTTTATCCTTGTACCCCAGGTA
TACAAAAAACTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no098_a01.b1 MSMg01no098_a01.b1 CHROMAT_FILE:
MSMg01no098_a01.b1 PHD_FILE: MSMg01no098_a01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:54:57 2005
         (595 letters)



>mm_chr1_132027774_132028768
          Length = 995

 Score = 1083 bits (560), Expect = 0.0
 Identities = 581/588 (98%)
 Strand = Plus / Plus

                                                                       
Query: 8   gaattcatcatagcaaaaatgagcattcagttttagaagaatctcagtgatgagtttcag 67
           |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 gaattcatcagaggaaaaatgagcattcagttttagaagaatctcagtgatgagtttcag 267

                                                                       
Query: 68  tatgtcttttaaatcaaaagccacatctcctactgtgcccaggagtgcatatattatttc 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 tatgtcttttaaatcaaaagccacatctcctactgtgcccaggagtgcatatattatttc 327

                                                                       
Query: 128 atttaatgctcaacccaaagcatgcttagctcctttcttcattggtaagtaaaggaaatg 187
           |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct: 328 atttaatgctcaacccaaagcatgtttagcttctttcttcattggtaagtaaaggaaatg 387

                                                                       
Query: 188 acacagaagtaaaataacaaatcaaagatgatactgttagctgtggatcaaatatttgaa 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 acacagaagtaaaataacaaatcaaagatgatactgttagctgtggatcaaatatttgaa 447

                                                                       
Query: 248 attaagcctaattcaaaagcatacatctgtgtttcttcacattcacctgtttgcaaatgt 307
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 448 attaagcctaattcaaaagcatacatctgtgtttcttcacattcacctgtttgcaaatga 507

                                                                       
Query: 308 agtaagctattataatctgatgaaaagtctccatttctatgcatttgagtgctctgaagt 367
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 agtaagctattataatctgatgaaaagtctccatttctatgcatttgagtgctctgaagt 567

                                                                       
Query: 368 tcacacctgtcatctgggttttgtttttccaccctgtagtgagctgctccctcctaagta 427
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 tcacacctgtcatctgggttttgtttttccaccctgtagtgagctgctccctcctaagta 627

                                                                       
Query: 428 tagtggtccaattgtggagcttctagctttagagaacactcattctaagcttcttgaagt 487
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 tagtggtccgattgtggagcttctagctttagagaacactcattctaagcttcttgaagt 687

                                                                       
Query: 488 caaaccatcccaatgttcttcattgccatttctaggctacatggacaggaaggagagatg 547
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 caaaccatcccaatgttcttcattgccatttctaggctacatggacaggaaggagagatg 747

                                                           
Query: 548 gcttatatgggggtaggggtgggatctaggtacttctcaccctgaggt 595
           |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 748 gcttatatgggggtgggggtgggatctaggtacttctcaccctgaggt 795


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 995
Length adjustment: 10
Effective length of query: 585
Effective length of database: 985
Effective search space:   576225
Effective search space used:   576225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)