BAC Information

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BAC

Clone NameMSMg01-098K24
Chromosome1 (Build37)
Map Location 17,993,934 - 17,994,177
singlet/doubletsinglet
Overlap genenone
Upstream geneJph1, Gdap1, LOC383495, Rbm6-ps1, Ppia-ps1_125.1, Pi15, Crispld1, LOC665564
Downstream geneLOC100040126, Crisp4, EG574082, EG654460, Defb17, LOC383499
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-098K24.T7 (MSMg01no098_k24.b1)MSMg01-098K24.TJ (MSMg01no098_k24.g1)
ACCAG314805AG314806
length706712
length of high quality
(start - end)
532 (36 - 567)243 (50 - 292)
definitionCHROMAT_FILE: MSMg01no098_k24.b1 PHD_FILE: MSMg01no098_k24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:52 2005CHROMAT_FILE: MSMg01no098_k24.g1 PHD_FILE: MSMg01no098_k24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:53 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTTG
TGATTCGGTTACCTCACTCAGGATGATGCCCTCCAGGTCCATCCACTTGC
CTAGGAATTTCACCAATTCATTCTTTTTAATAGCTGAGTAGTACTCCATT
GTCTAAATGTACCACATTTTCTGTATCCATTCCTCTGTTGAGGGGCATCT
GGGTTCTTTCCAGCTTCTGGCTATTACAAATAAGGCTGCTATGAACATAG
TGGAGCATGTGTCCTTATTACAAATTGAAACTTCTTCTGGATATATGCCC
AGTAGAGGTATTGCTGGATAATCCAGTAGTACTATGTCCAAAATTCTGAG
TAACCGCCAGACCGATTTCCAGAGTGGCAGTACAAGCTTGCAATCCCATC
AACAATGGAGGAGTGTTCCTGTTTCACCACATACTCACCAGCATCTGCTG
TCACTTGAATTTTTTATCTTAGCCATTCTGACTGGTGTGAGGTGGAATCT
CAGGGTTGCTTTGATTTGCATTTCCCTGATGATTAAGGGTGCTGAACATT
TTTTCAGGTGCTTCTCAGCCATTCAGTATTCCTCAAGTGAGAATTCTTTT
GTTAGCTCTGAATCCCATTTTTTAATGTCGCTATTTGATTTTCTGGAGTC
CACCTTCTTGAGCTCTTTATATAATTACATATTAGTCCCCTATCAGATTT
GGCACA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAAA
TTCACATGCAAGTGAATACTAGTGGAAAACTGACTATTATGAGCAAGGCT
CCAGTACAAGAGATGCTTGTAGGCATGTGTTAATCCTTATGTATATACTA
CAGACAAGTACAATGAATCTACTAAAAGTTACAAGTACACAATCCCTACT
TTACTGAGATATAACTTCAGCATAAATTGAGAAATCACATGCATGTGAAT
AAAGGAGTAGGGGAGAAAGGGGGAGGGAGGAAAGGAGAAGGGAGAATGTT
TTTTTCCGCCTTGGTCTTCCATTTGCAATGCTTAGATTTTTTTCTTTCCC
CCCCCCCCCCTCATTTTCTTTCTATGATTTTTTTACCCTCCCCCACCCTC
ACATAAAAAAAATTAATTCCTTCGATCCTCTTCTCCCTTTTTTATACTCC
GTCTTTCATTTTTATGTATTTCTCAACGCTTTCCTTATCTATTACGCTAT
ATCAGTGTGTGTTCAGGCCCGGTCGTACTATTTATGTTGTCGTTCTTCGT
CCGGTATCCTCTTTATTCCCTTTTTTTTCTCTAATGCTTTCACTATAATT
ATTCAATTCTATACCCCTGTCTCTGATCGTTTTTTTGTTCACCACCTTCT
TGCGCTTTACTTGTTTTTTGACTTTTTTTCCCGCTCATACACCCCTTTCA
CCCCTTTTTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no098_k24.g1 MSMg01no098_k24.g1 CHROMAT_FILE:
MSMg01no098_k24.g1 PHD_FILE: MSMg01no098_k24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:53 2005
         (243 letters)



>mm_chr1_17993734_17994377
          Length = 644

 Score =  410 bits (212), Expect = e-119
 Identities = 236/244 (96%), Gaps = 1/244 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   attcacatgcaagtgaatac-tagtggaaaactgactattatgagcaaggctccagtaca 59
           |||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||
Sbjct: 201 attcacatgcaagtgaatacataatggaaaactgactattatgagcaaggctctagtaca 260

                                                                       
Query: 60  agagatgcttgtaggcatgtgttaatccttatgtatatactacagacaagtacaatgaat 119
           ||||||||||||||||||||||||||||||||| |||||||||||| || ||||||||||
Sbjct: 261 agagatgcttgtaggcatgtgttaatccttatgcatatactacagataaatacaatgaat 320

                                                                       
Query: 120 ctactaaaagttacaagtacacaatccctactttactgagatataacttcagcataaatt 179
           ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 321 ctactaaaaattacaagtacacaatccctactttactgagatacaacttcagcataaatt 380

                                                                       
Query: 180 gagaaatcacatgcatgtgaataaaggagtaggggagaaagggggagggaggaaaggaga 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagaaatcacatgcatgtgaataaaggagtaggggagaaagggggagggaggaaaggaga 440

               
Query: 240 aggg 243
           ||||
Sbjct: 441 aggg 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 644
Length adjustment: 9
Effective length of query: 234
Effective length of database: 635
Effective search space:   148590
Effective search space used:   148590
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)