BAC Information

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BAC

Clone NameMSMg01-098M17
Chromosome1 (Build37)
Map Location 27,658,297 - 27,658,817
singlet/doubletsinglet
Overlap genenone
Upstream gene4931408C20Rik, LOC677427
Downstream geneLOC100040952, EG433281, EG665903
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-098M17.T7 (MSMg01no098_m17.b1)MSMg01-098M17.TJ (MSMg01no098_m17.g1)
ACCAG314883AG314884
length697703
length of high quality
(start - end)
467 (45 - 511)524 (54 - 577)
definitionCHROMAT_FILE: MSMg01no098_m17.b1 PHD_FILE: MSMg01no098_m17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:56:01 2005CHROMAT_FILE: MSMg01no098_m17.g1 PHD_FILE: MSMg01no098_m17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:56:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AACTACCTATCGGGAGAGGATCCGCGGAATTCTTTGTTCACTTCTGAGCC
CCATTTTTTAATGGGGTTATTTGATTTTCTGAAGTCCACCTTCTTGAGTT
CTTTATATATGTTGGATATTAGTCCCCTATCTGATTTAGGATAGGTAAAG
ATCCTTTCCCAATCTGTTGGTGGTCTTTTTGTCTTATTGACGGTGTCTTT
TGCCTTGCAGAAACTTTGGAGTTTCATTAGGTCCCATTTGTCAATTCTCG
ATCTTACAGCACAAGCCATTGCTGTTCTGTTCAGGAATTTTTCCCCTGTG
CCCATATCTTCAAGGCTTTTCCCCACTTTCTCCTCTATAAGTTTCAGTGT
CTCTGGTTTTATGTGAAGTTCCTTGATCCACTTAGATTTGACCTTAGTAC
AAGGAGATAAGTATGGATCGATTCGCATTCTTCTACACGATAACAACCAG
TTTTGCCAGCACCAATTGTTGAAAATGCTGTCTTTCTTCCACTGGATGGT
TTTAGCTCCCTTGTCGAAGATCAAGTGACCATAGGTGTGTGTGTTCATTT
CTGGGTCTTCAACTCTATTCCTTTGGCCCACTTGTCTGTCTCTATACCAG
TACCACGCAGTTTTTATCACAATTGCTCTGCACTATAGCTTTATGTCTGC
CTTGTTGATTCCGCCACAATTCTTTTACCCTTGAAATTATTTTTGTC
GGCGGCCGCCTGTCAAAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXATTCTCGTGCTGTCTTTGATTTTCAATAAACTGGTTGTAATGTAGTT
CCTAGATGCTTTGAAAAGTATAAATTAAATTATGGTTAGATGTATACTTC
TGCTTTTTTTTTCCAGAAAAAAAAATGTTTTTTGGAAGCCCATGATCTGT
TTATATGTGATAATTTTGAAGTTAACCAAAAAAAAAAAAACAAAAAAAAA
CAACAAAAAAAAAACAATAACAATAACAAATCTATTGAAAATCAAATAGG
TTATCACAACACTACTTTGCATAGAAAAGTAATGCTATAGTCTCCATGAG
TACTGAGTTATTCTGATTATTTCTCTTTCAACATGACATATTTAATCACT
GCTATACTTAGGGATAATCAAATCATATATTTCTTATAATATGTCAATCA
GAATTCACCTTTTACATGGATGGAAGGATGGACCATCCAGAGACTGCCCC
ACTCAGGGATCCATCCCATAATCAGCCACCAAACACAGACATTATTGCAT
ATGCCAGCAAGATTTTGCTGACAGGACCCTAATATAGTTCTCTCTTGTGA
GGTTATGCCAGTGCCTGGCAAATACAGAAGTGGATGCTCACAATCATCTA
TTGAATGCAACACAGGTCCCCCAATGGAGGAGCTAAAGAAAGTACCCAGG
AAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no098_m17.g1 MSMg01no098_m17.g1 CHROMAT_FILE:
MSMg01no098_m17.g1 PHD_FILE: MSMg01no098_m17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:56:01 2005
         (524 letters)



>mm_chr1_27657979_27658902
          Length = 924

 Score =  924 bits (478), Expect = 0.0
 Identities = 512/528 (96%), Gaps = 11/528 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   attctcgtgctgtctttgattttcaataaactggttgtaatgtagttcctagatgctttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 839 attctcgtgctgtctttgattttcaataaactggttgtaatgtagttcctagatgctttg 780

                                                                       
Query: 61  aaaag-tataaattaaattatggttagatgtatacttctgctttt--tttttccagaaaa 117
           ||||| ||||||||||||||||||||||||| |||||||| ||||  |||||||||||||
Sbjct: 779 aaaagttataaattaaattatggttagatgtgtacttctggtttttatttttccagaaaa 720

                                                                       
Query: 118 aaaaatgttttttggaagcccatgatctgtttatatgtgataattttgaagttaacc-aa 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 719 aaaaatgttttttggaagcccatgatctgtttatatgtgataattttgaagttaaccaaa 660

                                                                       
Query: 177 aaaaaaaaaaacaaaaaaaaacaacaaaaaaaaaacaataacaataacaaatctattgaa 236
           |||||||||||||||| |||||       |||||||||||||||||||||||||||||||
Sbjct: 659 aaaaaaaaaaacaaaacaaaac-------aaaaaacaataacaataacaaatctattgaa 607

                                                                       
Query: 237 aatcaaataggttatcacaacactactttgcatagaaaagtaatgctatagtctccatga 296
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 aatcaaataggctatcacaacactactttgcatagaaaagtaatgctatagtctccatga 547

                                                                       
Query: 297 gtactgagttattctgattatttctctttcaacatgacatatttaatcactgctatactt 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gtactgagttattctgattatttctctttcaacatgacatatttaatcactgctatactt 487

                                                                       
Query: 357 agggataatcaaatcatatatttcttataatatgtcaatcagaattcaccttttacatgg 416
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 486 agggataatcaaatcatatatttcttataatatgtcaatcagaactcaccttttacatgg 427

                                                                       
Query: 417 atggaaggatggaccatccagagactgccccactcagggatccatcccataatcagccac 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 atggaaggatggaccatccagagactgccccactcagggatccatcccataatcagccac 367

                                                           
Query: 477 caaacacagacattattgcatatgccagcaagattttgctgacaggac 524
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 caaacacagacattattgcatatgccagcaagattttgctgacaggac 319


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 52
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 924
Length adjustment: 10
Effective length of query: 514
Effective length of database: 914
Effective search space:   469796
Effective search space used:   469796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)