BAC Information

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BAC

Clone NameMSMg01-098O14
Chromosome1 (Build37)
Map Location 75,394,047 - 75,394,183
singlet/doubletsinglet
Overlap geneSpeg
Upstream genePnkd, Gm216, Slc11a1, Ctdsp1, Vil1, Usp37, Rqcd1, Plcd4, Zfp142, Bcs1l, Rnf25, Stk36, Ttll4, Cyp27a1, Prkag3, Wnt6, Wnt10a, LOC100042901, Cdk5r2, Fev, Cryba2, Ccdc108, Ihh, Nhej1, Slc23a3, 1810031K17Rik, BC038286, Zfand2b, Abcb6, Atg9a, D1Ertd161e, Stk16, Tuba4a, A630095N17Rik, Dnajb10, Ptprn, Resp18, Dnpep, Des
Downstream geneGmppa, Accn4, D1Bwg1363e, A230078I05Rik, AW822216, Inha, Stk11ip, Slc4a3, LOC100039069, LOC383531
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-098O14.T7 (MSMg01no098_o14.b1)MSMg01-098O14.TJ (MSMg01no098_o14.g1)
ACCAG314971AG314972
length780768
length of high quality
(start - end)
137 (184 - 320)---
definitionCHROMAT_FILE: MSMg01no098_o14.b1 PHD_FILE: MSMg01no098_o14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:56:10 2005CHROMAT_FILE: MSMg01no098_o14.g1 PHD_FILE: MSMg01no098_o14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:56:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCCCCTTTCCCTCCCNCCCTCCCCCTTTTCCCCTCCTCCCCTTTTTTCC
CCCCCNTCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCTAGATTTCCCTTTGGGGTATGGTCCCCTGTAGTCTC
TGATTTACAGTCTGGACTTGGATTGTCTCACTCATTTGTTTCTGGGGGAT
TGAATGTAGGGCCTTGCTAGGCCTCTTTTTCTTAGTCTGAAACAAGATCT
CTTTAGTTGCCTATGGTGGTCTTGAACTGACTCTGTATCTCTGGCTAGTT
ATTATCTCAGACTCCACAGTAGTTACGATTACAGGTTTGGGTCACCAGGT
TATCTATCGCATTCTCGTGAGTGTGTGTGTGTGTGTGTGTGTGTTGACGC
TTCTGACGGCTCATGTTTCCACCTCTCTCTGGCCTATGAGCTTCTGCTGT
TCTCTTAACCTCTTCTCTTCTACACAGTCTTATTACTGCGTGCCCTCCTT
ACCTTCCACCGCCTACCTTGGTAGTGCCTCACGGCTTGATTTCCCCGATA
AATGCTTTTCTTATTTCCTTCCCCTCTTCCTCATGTTTTGTGGCCCTTAA
CCCACCTCGCTTTGTCTCCTTTCTTTGTCCCCCCTCACCCTTGTGTGTTT
CTTACCCGCTGTGCTATCCTGCGTATTTTTATTCGCTCTCTAATATTTAT
TTTCTTTCCCCTATTCTCTTTTCCCTTCACCTTCTGTTGTTCCATCCCTT
CCCCCTCCCCTGCCCCTTTTTATTCCCTTC
NNNNNNNNNNNNNNNNNNNNTTTTCCTTCCCCCCCCCCNNNNGGCCTCCN
CNNNTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGGACTTTTTGCCATA
GTCAACATAAAGCCGCTCTATCAGCACAGAGGTGAAGCCAGAGCCGGTGC
CCCCTCCAATAGCTGTGGAATACTAGGAAGCCCTGAAGTCCTGTGCACTG
ATCATACTGAAAGGCAAGGAAGAAAGAGCAATATATGTAGGGTAAAGGCC
TGAGGAATTTTCTAGTTTTGTAAGGTCTAATGCATCTCACATGTTAGGAC
AAAGACTGAATACCCCCTATCATTTTCTATTTCTGAGACACCCCTAGTGA
TCATCCTAGATATGTATCCGACCCACATCCTTTTCCTGAGCCCAGAGTAC
AAAGTTCCCACCTCCCTGCCAGGCTGTATGTAATCTCCTCAGCTTGCGGA
ACCGGTCCAGTACTGGCTCTATGATTTCCTTGTCTATGTCGCAATGACCC
CGTGCTTACCAGCTGGACGCCTTCCCCTTTCCTCATGTCCTATTTGCCCC
GAGCGCTAAATTTGACCTTATGCCCCCTTTCTTGACCTTCTCCCAAATAC
CACTCTATCCCCTTTGTCCAATATCTGCTGGCTTAGGGGTCTTTTCTTCC
CTTAAGACACTTGATTGCAAGTCTGATTCTCCCATTACTTCGTCATTTTT
TTCTCCACCCCCCCACAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no098_o14.b1 MSMg01no098_o14.b1 CHROMAT_FILE:
MSMg01no098_o14.b1 PHD_FILE: MSMg01no098_o14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:56:10 2005
         (137 letters)



>mm_chr1_75393847_75394383
          Length = 537

 Score =  234 bits (121), Expect = 2e-66
 Identities = 133/137 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   atttgtttctgggggattgaatgtagggccttgctaggcctctttttcttagtctgaaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 atttgtttctgggggattgaatgtagggccttgctaggcctctttttcttagtctgaaac 278

                                                                       
Query: 61  aagatctctttagttgcctatggtggtcttgaactgactctgtatctctggctagttatt 120
           |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| 
Sbjct: 277 aagatctctttagttgcctagggtggtcttgaactgactctgtatctctggcaagttatg 218

                            
Query: 121 atctcagactccacagt 137
           ||||||| |||||||||
Sbjct: 217 atctcagcctccacagt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 137
Length of database: 537
Length adjustment: 8
Effective length of query: 129
Effective length of database: 529
Effective search space:    68241
Effective search space used:    68241
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)