BAC Information

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BAC

Clone NameMSMg01-099O19
Chromosome1 (Build37)
Map Location 33,854,076 - 34,004,152
singlet/doubletdoublet
Overlap geneZfp451, OTTMUSG00000022109, B230209C24Rik
Upstream geneEG633498, LOC213711, LOC100040828, EG666108, Prim2, 1700001G17Rik, Rab23, Bag2
Downstream geneDst, LOC100040913, LOC383629, LOC100040938, Ccdc115, Imp4, Ptpn18, Tesp1, Cfc1, Tesp2, 9430069J07Rik, AA619741, Arhgef4, BC043098, Plekhb2, LOC666261
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-099O19.T7 (MSMg01no099_o19.b1)MSMg01-099O19.TJ (MSMg01no099_o19.g1)
ACCAG315748AG315749
length706702
length of high quality
(start - end)		596 (45 - 640)509 (76 - 584)
definitionCHROMAT_FILE: MSMg01no099_o19.b1 PHD_FILE: MSMg01no099_o19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:57:37 2005CHROMAT_FILE: MSMg01no099_o19.g1 PHD_FILE: MSMg01no099_o19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:57:37 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,854,076 - 33,854,665)(34,003,644 - 34,004,152)
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCG
GAATTCACCTGACATTACCCTCTGGTCTCCACATGCTATGTACACACACT
ACATAGACATTTACCGCTCCCAACACACACACACATAACATTTCAGTTAA
GTACATAGTGGTAGAATTAAAAATATCAACATCCACGAGATTAAGGGAAA
AATGAGACTTCCTTTTGGAAAGAGGTTCTTGGGAAAGACAGATCAAAATC
ACAAACCCTCACCAAGAGGACAGGACTAAAAGCCCAGCATGGTGCCACAG
CCCTGAAGTCCCTGGCCCCAGGAGGAGACATGAAAACCATGTTTGGGGCA
GCTTGAGCAGCCACAACTGAACTGCGAGCACCTCTCTAGCCTACAGGGAA
TGAACACAAGCTCCAGCACTAAGATCTCAAAGCTCCACACATTACAAAAG
TGCATTATAGTAAAGTAAAATAAATAATGACACAGGAGTACAAAAATGGG
ACTCCAGTAATAAGAGAAAAAGGATTTAATAAAACAGCATTCTCAAAAAT
CATTCAGGAAGGGAAACTCCATACACTTTAATGGTTTATAAAACTTGTTA
GATATGAAAAGAAAGATTTGCATTCAATACAGTAATCAACATTTACTTAT
TGGTAACTTCCTCCTTTAAAATTTAAGTGAAAAGAACTAACTAGTTTGTA
TGCCCN

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTAGAAGCATGCTAAGATGCCATACA
GTTAAAGACAGTAAGAAGGAAAGACCGCCTGCTGAGCAGGCGCAGAGTCA
GTGCAATCTGCTCTGGCAGCAGCTAGGTCTCACAGCCCTGGGCCCAGACA
GTCATGCGCAATGGCAGGCTCTATAAATAGCCCCGCCACAAGCAAATCAT
AACCCAGCCTTTGTAATTACAGATGAATGTGAGCTCAATCTGTCTGCATG
CGGCCCTCTTCAGATTTAAAGAGTCACAGACAATAGTCCCTAATCCATAA
ATAAAAAGTCACCATCGTAAAAACGTGTGTGTAAAAAATCCTTTCCAAAA
CAAGACACCATGAGATGTGAACGAAATAAGCATATTTTATGGTGTGTTCG
CAACATCCATGGCACCCGGCTTGCTCCTACTCGCGGCTCTGCAACCTGTC
CCAGATCCAGCAGCTATAAACTCGGAGGAGCTAAAGGCAAGATTTTATGG
TGAGATGTGACTATATTTGATGAATGACACTTAAAANACAGGCATGAAGG
CCTGTCGCAAGTGATAAGGCAGTGCAGAGAGGTGCGATAAATAAAGAGGA
TCATGGGAGAAGCCAGGCAGGAAAGCCAGCACAGAGGTGCCGCCCGCCAC
AC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no099_o19.b1 MSMg01no099_o19.b1 CHROMAT_FILE:
MSMg01no099_o19.b1 PHD_FILE: MSMg01no099_o19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:57:37 2005
         (596 letters)



>mm_chr1_33853870_33854865
          Length = 996

 Score = 1087 bits (562), Expect = 0.0
 Identities = 583/590 (98%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattcacctgacattaccctctggtctccacatgctatgtacacacactacatagacat 66
           ||||||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||
Sbjct: 207 gaattcacctgacattaacctctgatctccacatgctatgtacacacactacacagacat 266

                                                                       
Query: 67  ttaccgctcccaacacacacacacataacatttcagttaagtacatagtggtagaattaa 126
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 267 ttaccgctcccaacacacacacacataacatttcagttaagtagatagtggtagaattaa 326

                                                                       
Query: 127 aaatatcaacatccacgagattaagggaaaaatgagacttccttttggaaagaggttctt 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 aaatatcaacatccacgagattaagggaaaaatgagacttccttttggaaagaggttctt 386

                                                                       
Query: 187 gggaaagacagatcaaaatcacaaaccctcaccaagaggacaggactaaaagcccagcat 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 gggaaagacagatcaaaatcacaaaccctcaccaagaggacaggactaaaagcccagcat 446

                                                                       
Query: 247 ggtgccacagccctgaagtccctggccccaggaggagacatgaaaaccatgtttggggca 306
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 447 ggtgccacagccctgaagtccctggtcccaggaggagacatgaaaaccatgtttggggca 506

                                                                       
Query: 307 gcttgagcagccacaactgaactgcgagcacctctctagcctacagggaatgaacacaag 366
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 gcttgagcagtcacaactgaactgcgagcacctctctagcctacagggaatgaacacaag 566

                                                                       
Query: 367 ctccagcactaagatctcaaagctccacacattacaaaagtgcattatagtaaagtaaaa 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 ctccagcactaagatctcaaagctccacacattacaaaagtgcattatagtaaagtaaaa 626

                                                                       
Query: 427 taaataatgacacaggagtacaaaaatgggactccagtaataagagaaaaaggatttaat 486
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 taaataatgacacaggagtacaaaaatgggactccagtaataagagaaaaaggatttaat 686

                                                                       
Query: 487 aaaacagcattctcaaaaatcattcaggaagggaaactccatacactttaatggtttata 546
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 aaaacagcattctcaaaaatcattcaggaagggaaactccatacactttaatggtttata 746

                                                             
Query: 547 aaacttgttagatatgaaaagaaagatttgcattcaatacagtaatcaac 596
           ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 747 aaacttgttagatatgaaaagaaaggtttgcattcaatacagtaatcaac 796


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 596
Length of database: 996
Length adjustment: 10
Effective length of query: 586
Effective length of database: 986
Effective search space:   577796
Effective search space used:   577796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no099_o19.g1 MSMg01no099_o19.g1 CHROMAT_FILE:
MSMg01no099_o19.g1 PHD_FILE: MSMg01no099_o19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:57:37 2005
         (509 letters)



>mm_chr1_34003444_34004352
          Length = 909

 Score =  953 bits (493), Expect = 0.0
 Identities = 505/509 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tagaagcatgctaagatgccatacagttaaagacagtaagaaggaaagaccgcctgctga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 tagaagcatgctaagatgccatacagttaaagacagtaagaaggaaagaccgcctgctga 650

                                                                       
Query: 61  gcaggcgcagagtcagtgcaatctgctctggcagcagctaggtctcacagccctgggccc 120
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 gcaggcgcagaatcagtgcaatctgctctggcagcagctaggtctcacagccctgggccc 590

                                                                       
Query: 121 agacagtcatgcgcaatggcaggctctataaatagccccgccacaagcaaatcataaccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 agacagtcatgcgcaatggcaggctctataaatagccccgccacaagcaaatcataaccc 530

                                                                       
Query: 181 agcctttgtaattacagatgaatgtgagctcaatctgtctgcatgcggccctcttcagat 240
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 529 agcctttgtaattacagatgaatgtgagctcaatctgtctgcatgtggccctcttcagat 470

                                                                       
Query: 241 ttaaagagtcacagacaatagtccctaatccataaataaaaagtcaccatcgtaaaaacg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 ttaaagagtcacagacaatagtccctaatccataaataaaaagtcaccatcgtaaaaacg 410

                                                                       
Query: 301 tgtgtgtaaaaaatcctttccaaaacaagacaccatgagatgtgaacgaaataagcatat 360
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 409 tgtgtgtaaaaaatcctttccaaaacaagacaccatgagatgtgaaggaaataagcatat 350

                                                                       
Query: 361 tttatggtgtgttcgcaacatccatggcacccggcttgctcctactcgcggctctgcaac 420
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 tttatggtgtgttcacaacatccatggcacccggcttgctcctactcgcggctctgcaac 290

                                                                       
Query: 421 ctgtcccagatccagcagctataaactcggaggagctaaaggcaagattttatggtgaga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 ctgtcccagatccagcagctataaactcggaggagctaaaggcaagattttatggtgaga 230

                                        
Query: 481 tgtgactatatttgatgaatgacacttaa 509
           |||||||||||||||||||||||||||||
Sbjct: 229 tgtgactatatttgatgaatgacacttaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 909
Length adjustment: 10
Effective length of query: 499
Effective length of database: 899
Effective search space:   448601
Effective search space used:   448601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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