BAC Information

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BAC

Clone NameMSMg01-100C15
Chromosome1 (Build37)
Map Location 107,429,525 - 107,429,967
singlet/doubletsinglet
Overlap genePign
Upstream geneLOC100041134, Cdh20, Rnf152, LOC100041985
Downstream geneLOC666249, 2310035C23Rik, LOC100042023, Tnfrsf11a, EG635504, Zcchc2, EG435634, Phlpp, LOC626075
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-100C15.T7 (MSMg01no100_c15.b1)MSMg01-100C15.TJ (MSMg01no100_c15.g1)
ACCAG315931AG315932
length844697
length of high quality
(start - end)
39 (136 - 174)444 (55 - 498)
definitionCHROMAT_FILE: MSMg01no100_c15.b1 PHD_FILE: MSMg01no100_c15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:57:57 2005CHROMAT_FILE: MSMg01no100_c15.g1 PHD_FILE: MSMg01no100_c15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:57:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTTTTTTTTTNTTNTNNNNTTTTTTTTTTCCNGCCCNNNNNNGGGTAA
TCATTGGGGCTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXGGCGCGGAATTCAAAGATCCTGCTGCTAAAGGAGAGACTACATCACCC
ATGATTTATCTTTATCTCACACAGTACACCCAGAGGAAGGAATTTCTGTA
ACTGCTTCCCAGGAGAGCAGCTGATGTTCTTCAAACCTAGCTGTGAATTC
AAAGGATAGGCGCTTGATATTTGTTGAAAATAACACTGCACTAATGTGTC
CTCCCCTCTCTAATAATTGTCACTCTCCATGCCCCACCAGGCATTTCCTC
CTATAAATCTCCATATTCTAAATTATTTTTTTCTTCCAAAGAAAGATCCA
CCGAACCCCAAACAATTTTTTTTTCCCCCCCCCCCCGCCCCACCGAATTC
TCCCTTTGAACTACTGCGTGTGCCCCCCCAAAAAAAAAAAAAAAAACTGG
GGGGGGGGGGGGGGGTCCTTCTCCCTTTTGTCCCAATATGTTTCGAGCCC
GTTTCTTATATATTACCCGTGTATGGTCTTGTGCAGAACATTTATTGTCA
ACATTCTTTAGGGTTTTCACGTCTTAGCTCTTAATTGAATCCCATTTGAT
AGTTGCCCGCCTCATAATTTTCTTTCCTCCCCCTCTATTATTTAATCCAA
TCATACGACATATAAACTAACTCTTCACCCTTTTCTCACTTTAACTTATC
TCTTATTTACTCTACCCTCTGTCATATCTCTTGTTATCCCGTACATNTTC
CCCATATCTCCTTTTTCCCCATTTTCGTCGTGTGGCGTGTGTTC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXACTGACAGTTGTGTCAGTGGAAATCAGGGCTGTATGAATGGGGTCT
TAGGCTGTTTTGCCTTTGTGACAAGTTTTCTTACTAAGCTTCTCTATGTT
AGAATATAACTGATATCCTCAAACATTTTGTGTCTGTTATTCATATGGGT
ATCCAGGCTGTTGTATGGCTTTATGAATGCCAGGATTTTAGACAATATAG
CAATTCACTAGCCTTGGGATCTTAGTTAACTTATCTGTGATATCATACAG
TGTTACCTAGAATGACAGAGTGGATCTACAGAATGTTTTTAAAAAATTTT
CTCAGCTGTAAATTGCAAGTTAGTAAAAAGTAATTATGGATGCCAAATCC
CCCAGCCAGATGCCTGAAGGAGCAGTGGTATTTCAGTAATGAGCTTCATC
AATGCTTCCTACCAACAATGTCAGCTTGAACAGGCTACAAGACAGGCATT
TCAGGCCATAGTGAGAAGACAACTGATCTGTGGAATGAATTGCTTTTATA
GATAGGCTTTTCCTTATACTACAAGATGCACCACTTATGTTTACAGACGC
TTTTGCTTACAGACCACGTTGACTTTATATTTACCTAAAACATTGCAAAA
TTTTAACAAAACTAAAATATTCACTGTATTCCTGCCCCATTCTATTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no100_c15.g1 MSMg01no100_c15.g1 CHROMAT_FILE:
MSMg01no100_c15.g1 PHD_FILE: MSMg01no100_c15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:57:57 2005
         (444 letters)



>mm_chr1_107429325_107430167
          Length = 843

 Score =  820 bits (424), Expect = 0.0
 Identities = 439/444 (98%), Gaps = 1/444 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   actgacagttgtgtcagtggaaatcagggctgtatgaatggggtcttaggctgttttgcc 60
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 643 actgacagttgtgtcagtggaaatcagggctgtatgaatgggttcttaggctgttttgcc 584

                                                                       
Query: 61  tttgtgacaagttttcttactaagcttctctatgttagaatataactgatatcctcaaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 tttgtgacaagttttcttactaagcttctctatgttagaatataactgatatcctcaaac 524

                                                                       
Query: 121 attttgtgtctgttattcatatgggtatccaggctgttgtatggctttatgaatgccagg 180
           |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 523 attttg-gtctgttattcatatgggtatccgggctgttgtatggctttatgaatgccagg 465

                                                                       
Query: 181 attttagacaatatagcaattcactagccttgggatcttagttaacttatctgtgatatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 attttagacaatatagcaattcactagccttgggatcttagttaacttatctgtgatatc 405

                                                                       
Query: 241 atacagtgttacctagaatgacagagtggatctacagaatgtttttaaaaaattttctca 300
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 404 atacagtgttacctagaatgacagagtggatctacagaatgttttttaaaaattttctca 345

                                                                       
Query: 301 gctgtaaattgcaagttagtaaaaagtaattatggatgccaaatcccccagccagatgcc 360
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 344 gctgtaaattgcaagttagtaaaaagtaattatggatgcgaaatcccccagccagatgcc 285

                                                                       
Query: 361 tgaaggagcagtggtatttcagtaatgagcttcatcaatgcttcctaccaacaatgtcag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 tgaaggagcagtggtatttcagtaatgagcttcatcaatgcttcctaccaacaatgtcag 225

                                   
Query: 421 cttgaacaggctacaagacaggca 444
           ||||||||||||||||||||||||
Sbjct: 224 cttgaacaggctacaagacaggca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 843
Length adjustment: 10
Effective length of query: 434
Effective length of database: 833
Effective search space:   361522
Effective search space used:   361522
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)