BAC Information

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BAC

Clone NameMSMg01-100N16
Chromosome1 (Build37)
Map Location 133,240,450 - 133,240,740
singlet/doubletsinglet
Overlap geneSrgap2
Upstream geneDaf2, Cd55, Zp3r, C4bp, C4bp-ps1, Pfkfb2, Yod1, AA986860, Fcamr, Pigr, Faim3, Il24, Il20, Il19, Il10, Mapkapk2, Dyrk3, Lgtn, Rassf5, Ikbke
Downstream geneLOC100042826, LOC100042821, 2700049P18Rik, Avpr1b, LOC667238, Ctse, 5430435G22Rik, Slc26a9, 4732466D17Rik, Slc41a1, Rab7l1, Nucks1, Slc45a3, Elk4, Mfsd4, Pctk3, LOC100042221, Lemd1, EG638532, Klhdc8a, Nuak2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-100N16.T7 (MSMg01no100_n16.b1)MSMg01-100N16.TJ (MSMg01no100_n16.g1)
ACCAG316435AG316436
length705646
length of high quality
(start - end)
290 (67 - 356)273 (34 - 306)
definitionCHROMAT_FILE: MSMg01no100_n16.b1 PHD_FILE: MSMg01no100_n16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:58:52 2005CHROMAT_FILE: MSMg01no100_n16.g1 PHD_FILE: MSMg01no100_n16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:58:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCTATTCCCCACCAAGTTGCTCATTTAAGTCTCTTTAACTTTCACCA
ATAATTAGAAAAAATAACCTCCTAATAATGGAACTTATATGATAATGTAT
TCAAATCACTTAGGAGAGACTTTAAATTTCTTAAAACACTATACATATTG
GCAAAGATATTTGAATATAGTTCTCAAAAACCAATAAACTTAATTCCCTT
GCCATGATCTCTTGTGAGTGAGAGGGCTTCTATACTAGCTGGTTAAAAGT
TTCCCTGATTTTTTCTAAGTGATTTCTTTAGGAGCATTCCTTTCTTTGAG
GGCCCCATAAGACACCTAGCACTTGTAGATGTTTTTGCTTTAAGTGTCAA
GGTGGTGTCCAAGTATGCCAGGCTCAAATCTTGTGCATTTAAAGCTTGCT
TTTCAGACAGTTGGCAAAAACTCTTGATTCCAAAGCTCCTGTGGGCGTCA
GTGTCTACTGATGTTCTTATAAGGCCAAAGAGTGCCCTTACCGTGAAATA
AAACTGTTCCGTCTCTTGCTGGTTCGCTCTCCTCTTAACAATGCTGGGCT
TGCTCATGAATGTTTCACAGACGGCTGATCTGACAGACTCCATGGAATTG
CTATACTGGAAGCGGCCAGATACCTCAAAATCCTCAACAGCCACAATGCC
TTGAA
AGACTATCGAATGACACAAGGAAGTCCATCAGTTGAGATAGCATGTAAAG
ACCTCTAAAGGCTTAGCCAGACCATATTCCAGCTTGGAGAGGGGCATGAC
GTTTCAGCCCTAGTTAAGGAGCAGCTGGCAAGTGATAGCCACTGGAAGAG
GAAGAATCATTTTTCTTTAAGGATGCAACCCCTAGTAGGTAGACCACCCT
CCAGTAAAACACACACACACACACACACACTCAAGAGAGACACACTTCAA
ACTGTATGAACAGAATATTTTGTTTTTGATGAGTTACAAAAAACAGAGAG
AGACTCTATATTGTTTGCCACACAAGGAGAAATGGATCTAAGAGGAGTGG
ACTGGATATGATCCAAATGCATTATATAAAACCCCGAAAGAATTGGACAC
AACAGGTAAATAAATAATTCAGAGATGGACTGTGAACTTTTAAGTCTATG
AGATCTTGTGTAGATCTCTGTTGCTTTTGCTCTATCCGCTCCTTTATGAT
TTCTGGCTAAACTCACCTATAGGCATTTTTTTCTCCCTATAATAGAGAAA
AATCTGATACCTTTCCTTTAACTTAAAAAGGTGGGTCATCAAGATTCTAG
CGTGGGAAATGGGGATTTCCAACATTTTATCGGGTTCCAATGGTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no100_n16.b1 MSMg01no100_n16.b1 CHROMAT_FILE:
MSMg01no100_n16.b1 PHD_FILE: MSMg01no100_n16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:58:52 2005
         (290 letters)



>mm_chr1_133240250_133240940
          Length = 691

 Score =  532 bits (275), Expect = e-155
 Identities = 287/291 (98%), Gaps = 1/291 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagttgctcatttaagtctctttaactttcaccaataattagaaaaaataacctcctaat 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 aagttgctcatttaagtctctttaactttcaccaataattagaaaaaataacttcctaat 260

                                                                       
Query: 61  aatggaacttatatgataatgtattcaaatcacttaggagagactttaaatttcttaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatggaacttatatgataatgtattcaaatcacttaggagagactttaaatttcttaaaa 320

                                                                       
Query: 121 cactatacatattggcaaagatatttgaatatagttctcaaaaaccaataaacttaattc 180
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caatatacatattggcaaagatatttgaatatagttctcaaaaaccaataaacttaattc 380

                                                                       
Query: 181 ccttgccatgatctcttgtgagtgagagggcttctatactagctggttaaaagtttccct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccttgccatgatctcttgtgagtgagagggcttctatactagctggttaaaagtttccct 440

                                                              
Query: 241 gatttttt-ctaagtgatttctttaggagcattcctttctttgagggcccc 290
           |||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 441 gatttttttctaagtgatttctttaggagcatccctttctttgagggcccc 491


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 691
Length adjustment: 9
Effective length of query: 281
Effective length of database: 682
Effective search space:   191642
Effective search space used:   191642
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)