BAC Information

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BAC

Clone NameMSMg01-100N19
Chromosome1 (Build37)
Map Location 15,239,665 - 15,372,553
singlet/doubletdoublet
Overlap geneLOC100039959, Kcnb2
Upstream geneEya1, LOC665391, Msc, Smt3h2-ps4, EG665407, Trpa1, EG269105, LOC100039949
Downstream genePpia-ps1_109.1, Terf1, Gm106, LOC665434, 4930444P10Rik, Rpl7, Rdh10, EG665282, Stau2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-100N19.T7 (MSMg01no100_n19.b1)MSMg01-100N19.TJ (MSMg01no100_n19.g1)
ACCAG316441AG316442
length698686
length of high quality
(start - end)
512 (36 - 547)246 (52 - 297)
definitionCHROMAT_FILE: MSMg01no100_n19.b1 PHD_FILE: MSMg01no100_n19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:58:52 2005CHROMAT_FILE: MSMg01no100_n19.g1 PHD_FILE: MSMg01no100_n19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:58:53 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,372,220 - 15,372,553)(15,239,665 - 15,239,910)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGCCC
ACCCTCAAGAAAATATGTTCAAGTCCCCATCTACTATTTCAAAATGGAAT
GTACTTAGAAATAAGGGTTTCATAAATAAGCCAGGTTAAACACAGTGCAT
AGGGTGGGCCCTGAGTCAGTGGCTGATGTCCTTAGTAAAAGAGGAAATTC
AGACAGTAGCAGAAATGAATATTATGCCATGTGAAGATGAAGGTAGATGT
AGAGAGATGGAGCATAAGCCCTGGAACTCCTAGGATGCTAGTAAACCTGT
AGCAGCTGGAAGAGAAACAGGATAGACTCTCCTCCATAGTTCTCAGAAGG
AAGCAGTAATGGACACTATGACCTAAGAATTCTTGCCTGCAGAATTATGG
GGTACTAACTTTCCATATCTTAAACAATGAAAGTAAATACCTTTACTCCT
TTTAGAGCTAGGTTTAAAAAGAGGCATTTCTGTATATCTTTTTTCTCCCC
TTTACTCAAATAACTACATGTTGGCACAAAGGCAAAGCTAACAAATGTAA
TTGTTGCGAAATGTGGGTATAAGAGATGCACTACCACTATGGGAAGTTAA
AAAGCACATCTGTAATAGTTAGACTTTCCATTTGCCATGCTTAAAAGTTG
GCAGTGAAGCCAAAGTCATGTGTGTTAACCAGTACAGCGTGCATGCCT
GGCGGCCGCCTTTTCGAGCGAGTAGGTGACCTATAGAAGTACTAAAAAAA
TTCACTCTTCTGGAAGTGAGGTGTGTGCAGAAAATTGTTTCTATTATTTT
AGAGAACATTTTGACAACACCCAGAGAATTGAAACTGTGTGTTCCCTGTG
GCTTAGCAATTTCATTCTCAGGATGAGAATTTCACAGGGTAGTCAGATTT
ATCAAATAAAGATATGAATTTCTTAGGTTAATGTAAAAATTTTAGTATAA
ATATGCCTCAGATATATCATGGGACATATTTATTAAAATATTTCCTTGNA
TANTTATGACCTATATTTTATATGGTTACCCTGGGTACTCTGTACACACC
TAGAAAATGTCTATGACCATAGATATATTGATTGTAACACACACACACAC
ACACAAAACTTATAAACTGGAAATATCCACACTTTGACCAAGCACATGCT
GCAGAAATAAACCATGGGTAACTGGGAAGTAAACAATTTTGATATCCTGG
ATGGATATCATCAAGGTGATATGAAGGAGAAAAAAACATGACTGATGAAC
TTACTTTTATAGCGATTACTTAGTTGTAACATCCAAATGATGTAAATGCC
CACAACTCATTGTCGAAAATTTTGCGAAAATGCCATAATATCTTGGAGTC
AAACACACGGAAGACCACTATTGGTCAGAGCTGTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no100_n19.b1 MSMg01no100_n19.b1 CHROMAT_FILE:
MSMg01no100_n19.b1 PHD_FILE: MSMg01no100_n19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:58:52 2005
         (512 letters)



>mm_chr1_15371642_15372553
          Length = 912

 Score =  607 bits (314), Expect = e-178
 Identities = 329/334 (98%)
 Strand = Plus / Minus

                                                                       
Query: 179 aatgaatattatgccatgtgaagatgaaggtagatgtagagagatggagcataagccctg 238
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 912 aatgaacattatgccatgtgaagatgaaggtagatgtagagagatggagcataagccctg 853

                                                                       
Query: 239 gaactcctaggatgctagtaaacctgtagcagctggaagagaaacaggatagactctcct 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 852 gaactcctaggatgctagtaaacctgtagcagctggaagagaaacaggatagactctcct 793

                                                                       
Query: 299 ccatagttctcagaaggaagcagtaatggacactatgacctaagaattcttgcctgcaga 358
           |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct: 792 ccatagttctcagaaggaagcagtaatggacactatgacctaagaatttttgcctgtaga 733

                                                                       
Query: 359 attatggggtactaactttccatatcttaaacaatgaaagtaaatacctttactcctttt 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 attatggggtactaactttccatatcttaaacaatgaaagtaaatacctttactcctttt 673

                                                                       
Query: 419 agagctaggtttaaaaagaggcatttctgtatatcttttttctcccctttactcaaataa 478
           ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct: 672 agagctaggtttaaaaagaggcatttctgtatatcctttttctcccctttacccaaataa 613

                                             
Query: 479 ctacatgttggcacaaaggcaaagctaacaaatg 512
           ||||||||||||||||||||||||||||||||||
Sbjct: 612 ctacatgttggcacaaaggcaaagctaacaaatg 579


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 912
Length adjustment: 10
Effective length of query: 502
Effective length of database: 902
Effective search space:   452804
Effective search space used:   452804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no100_n19.g1 MSMg01no100_n19.g1 CHROMAT_FILE:
MSMg01no100_n19.g1 PHD_FILE: MSMg01no100_n19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:58:53 2005
         (246 letters)



>mm_chr1_15239465_15240110
          Length = 646

 Score =  468 bits (242), Expect = e-136
 Identities = 245/246 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcactcttctggaagtgaggtgtgtgcagaaaattgtttctattattttagagaacattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcactcttctggaagtgaggtgtgtgcagaaaattgtttctattattttagagaacattt 260

                                                                       
Query: 61  tgacaacacccagagaattgaaactgtgtgttccctgtggcttagcaatttcattctcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgacaacacccagagaattgaaactgtgtgttccctgtggcttagcaatttcattctcag 320

                                                                       
Query: 121 gatgagaatttcacagggtagtcagatttatcaaataaagatatgaatttcttaggttaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatgagaatttcacagggtagtcagatttatcaaataaagatatgaatttcttaggttaa 380

                                                                       
Query: 181 tgtaaaaattttagtataaatatgcctcagatatatcatgggacatatttattaaaatat 240
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtaaaaattttagtataaatatgcctcagatatatcatgggacatatttattaaaatat 440

                 
Query: 241 ttcctt 246
           ||||||
Sbjct: 441 ttcctt 446


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)