BAC Information

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BAC

Clone NameMSMg01-101B16
Chromosome1 (Build37)
Map Location 3,467,206 - 3,467,740
singlet/doubletsinglet
Overlap geneXkr4, LOC100038975
Upstream genenone
Downstream geneLOC664792, LOC619785, Rp1h
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-101B16.T7 (MSMg01no101_b16.b1)MSMg01-101B16.TJ (MSMg01no101_b16.g1)
ACCAG316605AG316606
length738737
length of high quality
(start - end)
535 (70 - 604)249 (70 - 318)
definitionCHROMAT_FILE: MSMg01no101_b16.b1 PHD_FILE: MSMg01no101_b16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:59:11 2005CHROMAT_FILE: MSMg01no101_b16.g1 PHD_FILE: MSMg01no101_b16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:59:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGGAATTC
CAAGAACTATTTCTCAGAGTAAATTTTAATTAGCTGTGGAATGGCTGACT
TTCCTCTATTAATTAATCATGTATAGAGATATGTAAGCTATTAGACATAA
CCACATCTGATAAACACTCACTGCCCTCTTTGACAGTTAGTTGAATTTTC
AATTAAAATGCCTAGAATTCCTCTGCCTGTTCCAAATGGTGTGAAGTGGT
GATAAAATTCCACTCCTTGAAGAATACAGTACAGTGAGCTTCCTCATAAA
CAGAGGTATGTGAGTTTCCTTTTCCCAGGATCAATGTGATTAGCACAGGA
TCAAAGTAATGTATTATTAGCTATACAAGGGTGTATTATGGGGTGAAATG
GGTGGACATATGTGTGCGTGTGTAGTTGTGTATATCTATGTATTGCCATG
ACTACAATAAAGAGTAACATCACCAGATTCCAGTCAGTAACATCATGTAG
TGAAGCTAAAAGCACAGGCATATGGGAGCCATCCAGTTCTGAATTGTTGC
CTTAATGTGAAAATTACATGATGGCCATGTGATACATGTTTTGACCTCAG
CACAGAAGCTGAAGTGTGAGGATTGGGAGCTGGAGGACATCCTTGCCTAG
ATAGTTTAAGTATAGCCTAGGTTATTAAGTGAATTAGCTTATAAAAAAAA
GGTCTTATAAAGACACAGAAATAGCCTTTGTTTTTAAA
TGAAGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACTGAATGGCAGAGAAGC
ACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAA
ACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAA
TTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCC
TCAATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCCGGA
TGTCTGGCCGTTCCTCAGAATATTGGTCATAGTACTACCGGAGGATCCAG
CAATACCTCTCCTGGGCATATACCCCGAAGATGCCCCAACTAGTAAGAAG
GACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAG
TTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGT
GGTACATCTATCCCATGGAGTACTACTCATCTATTATAAAGAACGAATTT
ATGAAATTCCTAGTCAAATGGATGTACCTGCAGTGGACATTCTCAATGGA
ACACCCTCAATATATACTCACTGATAAATGTATATTACCTCCAAACCCTA
GTATACCCAATATTTTTTATTCTTTTTTCTAAAACCTTTGAATCTCATTA
AACATGCACACTGAACCGTGGACCCCATGCCCCCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no101_b16.b1 MSMg01no101_b16.b1 CHROMAT_FILE:
MSMg01no101_b16.b1 PHD_FILE: MSMg01no101_b16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:59:11 2005
         (535 letters)



>mm_chr1_3467006_3467940
          Length = 935

 Score = 1027 bits (531), Expect = 0.0
 Identities = 534/535 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   taaattttaattagctgtggaatggctgactttcctctattaattaatcatgtatagaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 taaattttaattagctgtggaatggctgactttcctctattaattaatcatgtatagaga 676

                                                                       
Query: 61  tatgtaagctattagacataaccacatctgataaacactcactgccctctttgacagtta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 tatgtaagctattagacataaccacatctgataaacactcactgccctctttgacagtta 616

                                                                       
Query: 121 gttgaattttcaattaaaatgcctagaattcctctgcctgttccaaatggtgtgaagtgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 gttgaattttcaattaaaatgcctagaattcctctgcctgttccaaatggtgtgaagtgg 556

                                                                       
Query: 181 tgataaaattccactccttgaagaatacagtacagtgagcttcctcataaacagaggtat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 555 tgataaaattccactccttgaagaatacagtacagtgagcttcctcatacacagaggtat 496

                                                                       
Query: 241 gtgagtttccttttcccaggatcaatgtgattagcacaggatcaaagtaatgtattatta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 gtgagtttccttttcccaggatcaatgtgattagcacaggatcaaagtaatgtattatta 436

                                                                       
Query: 301 gctatacaagggtgtattatggggtgaaatgggtggacatatgtgtgcgtgtgtagttgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 gctatacaagggtgtattatggggtgaaatgggtggacatatgtgtgcgtgtgtagttgt 376

                                                                       
Query: 361 gtatatctatgtattgccatgactacaataaagagtaacatcaccagattccagtcagta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 gtatatctatgtattgccatgactacaataaagagtaacatcaccagattccagtcagta 316

                                                                       
Query: 421 acatcatgtagtgaagctaaaagcacaggcatatgggagccatccagttctgaattgttg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 acatcatgtagtgaagctaaaagcacaggcatatgggagccatccagttctgaattgttg 256

                                                                  
Query: 481 ccttaatgtgaaaattacatgatggccatgtgatacatgttttgacctcagcaca 535
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 ccttaatgtgaaaattacatgatggccatgtgatacatgttttgacctcagcaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 935
Length adjustment: 10
Effective length of query: 525
Effective length of database: 925
Effective search space:   485625
Effective search space used:   485625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)