BAC Information

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BAC

Clone NameMSMg01-101C19
Chromosome1 (Build37)
Map Location 75,213,048 - 75,213,502
singlet/doubletsinglet
Overlap geneTuba4a
Upstream geneIl8ra, Arpc2, Gpbar1, Aamp, Pnkd, Tmbim1, 2410125D13Rik, Gm216, Slc11a1, Ctdsp1, Vil1, Usp37, Rqcd1, Plcd4, Zfp142, Bcs1l, Rnf25, Stk36, Ttll4, Cyp27a1, Prkag3, Wnt6, Wnt10a, LOC100042901, Cdk5r2, Fev, Cryba2, Ccdc108, Ihh, Nhej1, Slc23a3, 1810031K17Rik, BC038286, Zfand2b, Abcb6, Atg9a, D1Ertd161e, Stk16
Downstream geneA630095N17Rik, Dnajb10, Ptprn, Resp18, Dnpep, Des, Speg, Gmppa, Accn4, D1Bwg1363e, A230078I05Rik, AW822216, Inha, Stk11ip, Slc4a3, LOC100039069, LOC383531
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-101C19.T7 (MSMg01no101_c19.b1)MSMg01-101C19.TJ (MSMg01no101_c19.g1)
ACCAG316654AG316655
length680771
length of high quality
(start - end)
242 (45 - 286)455 (135 - 589)
definitionCHROMAT_FILE: MSMg01no101_c19.b1 PHD_FILE: MSMg01no101_c19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:59:17 2005CHROMAT_FILE: MSMg01no101_c19.g1 PHD_FILE: MSMg01no101_c19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:59:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTTTTCAAAGAGAGGCGCGGATTCTAGAGTTCCCAAAGAAGGATGGTCC
CCTGTAGTCTCTGATTTACAGTCTGGACTTGGGTTGTCTGACTCATTTGT
TTCTGGGGGATTGAATGTAGGGCCTTGCTAGGCCTCTTTTTCTTAGTCTG
AAACAAGATCTCTTTAGTTGCCTAGGGTGGTCTTGAACTGACTCTGTATC
TCTGGCAAGTTATTATCTCAGACTCCACAGTAGTTAGGATTACAGGTTTG
GGTCACCAGGTTATCTATCGCATTCTCGTGTGTGTGTTTGTTTGTGTGTG
TGTGCTGATGCTTTTGAGGGCTCATGTAATCACATCTCTCCGCCCTATAG
TTTCTGCTGCCATCCCAACCTCCCCTCTCATACACAGCCTTATTACTGTG
TGTCCTCCTTAGCATCCACAGGCTACTCAGGGAGTGCTCATGGCTTGAAC
TCCCTGGATAATGCTTCCCTTATTTCTCTCCCCTCGTCCCTATGTTCTGT
GGTCCACCTTCCATCTAGCAGTGTTCCCAAGCATGGCTCCTAGGACCAAG
GTGTGTAAAAGATTGTTGTGTAGCCAGGTTTTTTTTGTTTTGGCTCCATT
TACTCTATATTATCCGCATATATTAGCATACCCTACATTTTGGTGAGCAG
GAATGAGGCTGAGTGTGTTGTTTTGATCCA
AAATAATAAATACCCCTCTCTATATTCACAGCTCCTNNCCCCCCCAAATC
TTTTTTTCGATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGGACTTTTTGCCATA
GTCAACAGAAAGCCGCTCCATCAGCAGATCGGTGAAGCCAGAGCCGGTGC
CCCCTCCAAAGCTGTGGAATACTAGCAAGCCCTGAAGTCCTGTGCACTGA
TCAGACTGAAAGGCAAGGAAGAAAGAGCAATATAGGTAGGGGAAAGGCCT
GAGTATTTTTCTAGTTTTGTAAGGTCTAAAGTATCTCAGATGTTAGGATA
AAGACTGAATATCCCCTAACAGCATCATTTTCTGAGACACAACTAGTGAT
CATCCTAGAAATGGATCCGATAAAAATACTTTTCCTGAGCACAGAGTCCA
AAGCTCCCTCCTCCCTGCCAGGCTGTATGTAGTCTCACCAGCTTGCGGAT
CCGGTCCAGCACTGGGTCGATGATCTCCTTGCCAATGGTGTAATGACCAC
GGGCATAGCTGTTGGCTGCATCTTCTTTCCCAGTGATAAGCTGCTCTGGG
TGGAAGAGCTGACGGTATGGGCCATTTCGGATCTCATCTGAAAAACCATA
TATCACATTGTCAAAACCACCTGACTTCTGCTCCTTCCCCCTCCCCACCC
ACTGAGTGGCAGCTGAAGCCAGATAGAATTAAAGAGCTAGCTCATCCTTC
TGCCAGCATCCTGTGGTCAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no101_c19.g1 MSMg01no101_c19.g1 CHROMAT_FILE:
MSMg01no101_c19.g1 PHD_FILE: MSMg01no101_c19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:59:17 2005
         (455 letters)



>mm_chr1_75212848_75213702
          Length = 855

 Score =  803 bits (415), Expect = 0.0
 Identities = 445/455 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggactttttgccatagtcaacagaaagccgctccatcagcagatcggtgaagccagagc 60
           ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||
Sbjct: 201 tggactttttgccatagtcaacagaaagccgctccatcagcagagaggtgaagccagagc 260

                                                                       
Query: 61  cggtgccccctccaaagctgtggaatactagcaagccctgaagtcctgtgcactgatcag 120
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 261 cggtgccccctccaaagctgtggaatactaggaagccctgaagtcctgtgcactgatcag 320

                                                                       
Query: 121 actgaaaggcaaggaagaaagagcaatataggtaggggaaaggcctgagtatttttctag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 321 actgaaaggcaaggaagaaagagcaatataggtaggggaaaggcctgaggaattttctag 380

                                                                       
Query: 181 ttttgtaaggtctaaagtatctcagatgttaggataaagactgaatatcccctaacagca 240
           |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct: 381 ttttgtaaggtctaaagtatctcagatgttaggacaaagtctgaatatcccctaacagca 440

                                                                       
Query: 241 tcattttctgagacacaactagtgatcatcctagaaatggatccgataaaaatacttttc 300
           ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 441 tcaatttctgagacacaactagtgatcatcctagaaatggatccgaaaaaaatacttttc 500

                                                                       
Query: 301 ctgagcacagagtccaaagctccctcctccctgccaggctgtatgtagtctcaccagctt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctgagcacagagtccaaagctccctcctccctgccaggctgtatgtagtctcaccagctt 560

                                                                       
Query: 361 gcggatccggtccagcactgggtcgatgatctccttgccaatggtgtaatgaccacgggc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcggatccggtccagcactgggtcgatgatctccttgccaatggtgtaatgaccacgggc 620

                                              
Query: 421 atagctgttggctgcatcttctttcccagtgataa 455
           |||| ||||||||||||||||||||||||||||||
Sbjct: 621 atagttgttggctgcatcttctttcccagtgataa 655


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 455
Length of database: 855
Length adjustment: 10
Effective length of query: 445
Effective length of database: 845
Effective search space:   376025
Effective search space used:   376025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)