BAC Information

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BAC

Clone NameMSMg01-101F02
Chromosome1 (Build37)
Map Location 112,856,399 - 112,856,670
singlet/doubletsinglet
Overlap geneCdh19
Upstream geneCdh7, LOC100041429, EG626652
Downstream geneEG666578, Dsel, LOC547247
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-101F02.T7 (MSMg01no101_f02.b1)MSMg01-101F02.TJ (MSMg01no101_f02.g1)
ACCAG316761AG316762
length697707
length of high quality
(start - end)
590 (54 - 643)287 (80 - 366)
definitionCHROMAT_FILE: MSMg01no101_f02.b1 PHD_FILE: MSMg01no101_f02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:59:29 2005CHROMAT_FILE: MSMg01no101_f02.g1 PHD_FILE: MSMg01no101_f02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:59:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGCGCGGCATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XGCCGCGGAATTCTTACCTGTACCAGACCAAATGGCAGAGAAGCACCTGA
AAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACATC
CCTGAGATTCCACCTCACGCCCGTCAGAATGGCTAAGATCAAAAATTAAT
GTGACAGCAGTTGCTGGCGAGGATGTGGAAAAAGAGGAACACTCCTCCAT
TGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATTAGTCTGGCG
GTTCCTCAGAAAATTGAACATAGTACTACTGAAGTATCCTGCAATACCTC
TCCTGGGAATATATCCAGAAGATGTTCCAACTAGTAAGAAGGACACATGC
TCCACTATGTTCATAGCAGCCTTCTTTATAATAGCCAGAAGCTGGAAAGA
ACCCAGATGTCCCCCAACAGAGGAATGGATACAGAAAATGTGGTACATTT
ACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATTAAATTC
CTAGGCAAATGGATGGACCTGGAGGGCATCATCCAGAGTGAGGTAACCCA
ATCACAAAGGAACTCACACAATATGTACTCACTGATAAATAGATATTAGC
CCAGAAACTTTGGATACCCAAGATATAAGATACAATTTGCTAAATGC
CTCCTTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTGGATTAAAAAAAAAAGAT
AGAGCAGGACTACACCAGTACCATGGGTCTCTCTAATGGAAGCTTTTCCT
TTAATCTTCCAGTTCCCAAACCACTTTCCGTTGATTTTTTTCTTTGGCTC
ATGAGTGTCTTTAAGGCCAGCAACATAGGATCATCAGATCTCTCCTGGAT
CTATCTGCAAATTACCTATTCTAGTTGTGTGAAATTTCTTTCTGCCTTTC
TCTACTATCTACTGTAGAGAATTTATTTGTTCCTATCTCAGTGATTCAAA
CAAAATCTTCTCTTGTTCCACAATGGTGATATTCATAGATGCCAAAAGTG
TGACCTCAATAATTTTGATAATTATTATAGTCTACAAGAAATACTAATAA
GAAAATGAAAGACTAGCCACAGAGTGAAAACAAATGATTATAGATTATAT
CTATGAAAAAAGGAAATTATGACGAATATTATAGCATTCTGGAATTACCA
TAAAAATATGCCTATAACTTTCCAGTATAACAAGCATTGGAACCAAATTC
CATAGCAGTCACCTATGACAGAATTGTTAACAAATAATCATTGATCGGGC
CCTGTCCCTAACACTATTGTCTGTCTGCGGATTTCATCCCAGTCAGAAAC
TGGATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no101_f02.g1 MSMg01no101_f02.g1 CHROMAT_FILE:
MSMg01no101_f02.g1 PHD_FILE: MSMg01no101_f02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:59:29 2005
         (287 letters)



>mm_chr1_112856184_112856870
          Length = 687

 Score =  489 bits (253), Expect = e-143
 Identities = 270/279 (96%), Gaps = 7/279 (2%)
 Strand = Plus / Plus

                                                                       
Query: 9   aaaaaaaaaagatagagcaggactacaccagtaccatgggtctctctaatggaagctttt 68
           ||||||||||||||||||||||||||||||||||||||||||||||||||     |||  
Sbjct: 216 aaaaaaaaaagatagagcaggactacaccagtaccatgggtctctctaat-----ctt-- 268

                                                                       
Query: 69  cctttaatcttccagttcccaaaccactttccgttgatttttttctttggctcatgagtg 128
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 269 cctttaatcttccagttcccaaaccactttcagttgatttttttctttggctcatgagtg 328

                                                                       
Query: 129 tctttaaggccagcaacataggatcatcagatctctcctggatctatctgcaaattacct 188
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 329 tctttaaggccagcaacataggatcattagatctctcctggatctatctgcaaattacct 388

                                                                       
Query: 189 attctagttgtgtgaaatttctttctgcctttctctactatctactgtagagaatttatt 248
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 attctagttgtgtgaaatttctttctgcctttctctactatctactgtagagaatttatt 448

                                                  
Query: 249 tgttcctatctcagtgattcaaacaaaatcttctcttgt 287
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 449 tgttcctatctcagtgattcaaacaaaatcttctcttgt 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)