Query= MSMg01no101_f10.b1 MSMg01no101_f10.b1 CHROMAT_FILE:
MSMg01no101_f10.b1 PHD_FILE: MSMg01no101_f10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:59:30 2005
(507 letters)
>mm_chr1_195085075_195085981
Length = 907
Score = 828 bits (428), Expect = 0.0
Identities = 479/500 (95%), Gaps = 9/500 (1%)
Strand = Plus / Plus
Query: 13 gaattctttgtttagctctaaaccccacttttaatggggttacttgattttctggagtcc 72
||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||||
Sbjct: 212 gaattctttgtttagctctaaaccccatttttaatggggttatttgaatttctggagtcc 271
Query: 73 agcttcttaagctctttgtatatattggatattagtccctaga-tttttttaaaatgaca 131
||||| || ||||||||||||||||||||||||||||||| || ||||||| ||| ||||
Sbjct: 272 agctttttgagctctttgtatatattggatattagtccctggatttttttttaaacgaca 331
Query: 132 ctttatttggtgtcttccaggccctaatgctacaccttcacagtctccatgggattatca 191
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 cttcatttggtgtcttccaggccctaatgctacaccttcacagtctccatgggattatca 391
Query: 192 atcagcgtttgagtcattagggtgagccgaggtggtaccagggctgtggttccctttctt 251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 atcagcgtttgagtcattagggtgagccgaggtggtaccagggctgtggttccctttctt 451
Query: 252 ctcttgtgtcctttgcctctcctcgagagttaat----atttttctccattcttattctt 307
|||||||||||||||||||||||||||||||||| | |||||||| ||||||||
Sbjct: 452 ctcttgtgtcctttgcctctcctcgagagttaataaaca----tctccatttttattctt 507
Query: 308 tgccttctgagttgcttatgttctccagaacttctggtaagaaacacaaaccaagcaaac 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 tgccttctgagttgcttatgttctccagaacttctggtaagaaacacaaaccaagcaaac 567
Query: 368 aggtcccatgtgctgggtagtaagcctgctttcatctcttccagtttggacagagctttg 427
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 568 aggtcccatgtgctgggtagtaagcctgctttcatctcttccagcttggacagagctttg 627
Query: 428 ccgtttggtggtgcagaaagctccctttgcagttaactggggatctccattttcatcttt 487
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 ccgtttggtggtgcaggaagctccctttgcagttaactggggatctccattttcatcttt 687
Query: 488 cttggtgtacctacccagga 507
||||||||||||||||||||
Sbjct: 688 cttggtgtacctacccagga 707
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 907
Length adjustment: 10
Effective length of query: 497
Effective length of database: 897
Effective search space: 445809
Effective search space used: 445809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no101_f10.g1 MSMg01no101_f10.g1 CHROMAT_FILE:
MSMg01no101_f10.g1 PHD_FILE: MSMg01no101_f10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:59:30 2005
(249 letters)
>mm_chr1_195229104_195229752
Length = 649
Score = 435 bits (225), Expect = e-126
Identities = 240/245 (97%)
Strand = Plus / Minus
Query: 1 tattttaatatgtgctgctgcagataatcctcagagctgatggtggatgctggaagtgac 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct: 445 tattttaatatgtgctgctgcagataatcctcagagctgatggtggatggtgggagtgac 386
Query: 61 tggagaaagactggggccttgcagagaaggctttgagaaagagggaggagtttaaagtaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tggagaaagactggggccttgcagagaaggctttgagaaagagggaggagtttaaagtaa 326
Query: 121 gagttgagccttggaaagcgacaggcaggctgaggatggaaaagctgctcaggcttggag 180
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gagctgagccttggaaagcgacaggcaggctgaggatggaaaagctgctcaggcttggag 266
Query: 181 agcagtggtaggaataacagtcatgacatcaggggcctggccactctgtggggcaatctg 240
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct: 265 agcagtggtaggaataacagtcatgacatcaggggcctggccactccgtgaggcaatctg 206
Query: 241 gctca 245
|||||
Sbjct: 205 gctca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space: 153600
Effective search space used: 153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
