BAC Information

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BAC

Clone NameMSMg01-101G14
Chromosome1 (Build37)
Map Location 196,592,723 - 196,592,838
singlet/doubletsinglet
Overlap genePlxna2
Upstream geneLOC667208, EG623172
Downstream geneCd34, Cd46, Crry, Cr2, EG635956, LOC623380
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-101G14.T7 (MSMg01no101_g14.b1)MSMg01-101G14.TJ (MSMg01no101_g14.g1)
ACCAG316830AG316831
length805845
length of high quality
(start - end)
116 (133 - 248)35 (134 - 168)
definitionCHROMAT_FILE: MSMg01no101_g14.b1 PHD_FILE: MSMg01no101_g14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:59:36 2005CHROMAT_FILE: MSMg01no101_g14.g1 PHD_FILE: MSMg01no101_g14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:59:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTTTCTTCGGGTTTTTCTTTCTTTTTTTTTCTCCCTTTCCTCATAAAAC
AAACAAATCTAAATTTGCGGCGCTATACGACTCCTATTCAAAGAAGACCG
CGGAATTCTCAGATTACCAAAAAAAGATAAGCCCTGAGCTCAGAACACAT
AAAGCTACACTTTATGGCTTGTTCCTCTAGGGCCTCCAAATTAGTTAGAA
AAAAATTCAAAACTAAATGCTTGCATAATGATCATGTAATCTATCAGGAA
CTAGTTTGTCCTCTCTGGGAAAATACATTCTTCATCTACGTTGGTATGAA
TAGGTTTGACTCACTCTCTTCTTGCTACCATGCCTCCCACTTCATTCCCT
TACACCTTCTTCTAGNCTAATTTTATTCTGTTACCTCACCCTCACAACTT
CTAGGGTGCCTACTGATATTCCTGTCTTCTCACGATCCAACATCTATATT
ATTTAATGCTTGTTACCTGCACTCATTATTATATGTTAAAGCTCACTATA
TAATATTAAGCTTCCTCCCTATTTAACACTTACAATGAATATATGAATCC
TATATCCTCTCATTTGACAGGCAAATGTTAAATAACACTAGTTAAAGTCA
TTATTAACACGTCAACACCCGTGCATATATACTGTGTCAGAATTTAACCT
CAACACTCCCCTCCACCAACCTTTTATTTTCCTACTACAATAATGTCTAT
ACTTATTTTTTCTAGTCTTATAATTTTTTTTATCCCTGCTTTCACGTCAA
TACTAATTCTCCCTTAAATCCCAACCTCCCTACTTCTTCTCTACTCGTCT
TCTTT
CCGNNCCCCCCCCCCNNNNCCCCNCCCCTCTTCCCTTTCTTATTTTATAN
NNAAACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCTAAAAGTGA
GGTGACCTATAGAAGTATCGCGAAATTCTGAGATACCTAGACTGCCCTTT
GGCTTCTGTAACTAAAGATTGTACACGCATGCTGAGTTACAGCAAACAAT
ACTTTCTCCTGTCTTCATGTTGGTATATTTTCCCCTCTTTTTCTCCAGCT
GATTCTCTTCATTTTTTTGTGTTTTTTTGTTTGTTTGCTTTTTTCATCTC
ATTCTCTATATTCCACACTACTTGCAAACTGTGATCTTAATACAACCACA
AAGATGCTATAAATGCTCATACTTTTTTTGTGCTTCCCTCAGAACAATAA
AGATATAATTTTTTTATTTTTTCTCCCACTCACTCTTTTAATTTTAAAGC
ATATATTACAATCTTCATTTTTGATCTTACAGTACCTTACTACTCATATG
TTCAATCCTTTTTTTTCTCATTTTACTTGTTTTTAATATATTATTATTCC
TAGACTGATATAATAAATATCAGTATCTCTCCTTCTTCCTTATCACCTCA
CTACATTTTATAATGTAAATCTCCACCTCTTTATCCCCCACGTTATATCT
ACTTATTCTCCTTTTCTCTCTTGCACATTAAATTATTTTCTTTTCTATTT
TCTACAATCATTTTAATTTATATTTAATCTTATCTCCTCTTATGTCTATT
ATTATAATTCAAAATCAACATTATTACTTTTCTTTATAACTTTATATCTA
TACATTATACTATCTCACCGCTCATACTAACGACTTGCCGAGCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no101_g14.b1 MSMg01no101_g14.b1 CHROMAT_FILE:
MSMg01no101_g14.b1 PHD_FILE: MSMg01no101_g14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:59:36 2005
         (116 letters)



>mm_chr1_196592523_196593038
          Length = 516

 Score =  209 bits (108), Expect = 5e-59
 Identities = 114/116 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctgagctcagaacacataaagctacactttatggcttgttcctctagggcctccaaatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctgagctcagaacacataaagctacactttatggcttgttcctctagggcctccaaatt 260

                                                                   
Query: 61  agttagaaaaaaattcaaaactaaatgcttgcataatgatcatgtaatctatcagg 116
           ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 261 agttagaaaaaaaatcaaaactaaatgcttgcagaatgatcatgtaatctatcagg 316


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 116
Length of database: 516
Length adjustment: 8
Effective length of query: 108
Effective length of database: 508
Effective search space:    54864
Effective search space used:    54864
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)