BAC Information

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BAC

Clone NameMSMg01-101G22
Chromosome1 (Build37)
Map Location 195,620,619 - 195,620,864
singlet/doubletsinglet
Overlap genenone
Upstream geneA730013G03Rik, Sertad4, LOC100039677, Syt14, AA408296, Irf6, A130010J15Rik, Traf3ip3, Hsd11b1, G0s2, Lamb3, Camk1g
Downstream geneLOC667208, EG623172, Plxna2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-101G22.T7 (MSMg01no101_g22.b1)MSMg01-101G22.TJ (MSMg01no101_g22.g1)
ACCAG316846AG316847
length784772
length of high quality
(start - end)
247 (133 - 379)57 (137 - 193)
definitionCHROMAT_FILE: MSMg01no101_g22.b1 PHD_FILE: MSMg01no101_g22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:59:38 2005CHROMAT_FILE: MSMg01no101_g22.g1 PHD_FILE: MSMg01no101_g22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:59:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTTTTTTTTTTTTTTNNTTTTTTTTTTTTTTTCTTCTNNCCCCCCGCA
CACGAACCAATCCTAATAAXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAG
AGGAGCCGCGGAATTCTGTCTTTTCCCAAACCGCTCTGCCAGCTGACAGC
AGCTTTCACCTTGAATCCTTCAGTCACCTTTTTCTAAAAATCCCTTTGCA
GCAACGCTAATAGCAATAGCTTGGCCATCTTGCCTGTAGTTGGAGTATGT
GCAAGTAGAGGTGACTTGAACTACAGAATAAATGACCTATCCATAGGACC
ACACTTTAAAAACAGATGTAGTTTTCCATTTCCCACTTCACAGCATAGAT
TTGGGACATGGCCTGATTTCTAGGATGATTGTTTTACAGGAAGGGGAGAA
AAAAGTCCAGGAGGAGATGATAACAATGCTTCTTTCCTGCGTGTCAGGTT
GAAGAATTTCTGTACTGATAGGTACTGACGCTCTGTGTAAGGCAAAACAG
AGAACGAGCTGTCGAACAAACCATGAGGAATGTTCTATCAAAGAGGCCAG
TTACTGAGGCTGCCTCCAGAGGCTCGTGATTGATCGTAACTGAACAGTGA
TTATCGCGTATTTCTTATGCTCCTGTTTAATACTCTGTATTCCAAGCATA
TATCCCTGCACTGGTTAATCTCATTCGTTTAACAATAACCTACATCACCT
TCCTACCATGGTTGTCTCACCCACGTTCTCAACTGCTGTGAATCGACCAC
CTGATACGCTCTGTTTTGGAACAGGACTTTCATG
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTCCCCCCCNTCCCCCGT
TATTTTTTTTTTACTATGATACGTXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCCTTCTTATTAAGT
GTACCTCTAATCTAATTAGATGGTTGTTTGTTACTCCAAGATATTAGTAA
GTGCATCTATTGTACCTTTAAAGATGTCTTGCTATTTTTCTCATTACTGT
GATTTGTATACAGCATATCTGAGTAGAACTATTGATTGGTTTTCCCCTTG
GCAAGCTTATAAACCTCCACTGGAACTGAGACCTAAACTTTAATGGGAGA
CTTCCAGGTCAGTCCCAGATCAATCTCTCCAATTGTTAACGGCATAGCTT
ATATTATTTAGAAAGTCTCTTGTTATCCCCTGATCAACCCTTTGAAAGAA
TATTTTCCATGTTAGACACTGGGTGACTTCTACTATTTTATACTACACAT
TTATATGACAGTGACTTTTTTCAGCCTTGACCATTATTACGTTGAAATAT
CATCCTACACTGAAAAATATTGAAAGTGATCTGTATCCTGCTGTATCATA
TATTTATCCAAGTATTTAATTCCTCTATGTTAAAATAATTGAAACATAAT
CATTTGAATGAGTATAAAAATTTGTTTTTTATTTTCATAAATTGATAATA
TTTTTTGATATATCAAATGTTCAACTCTAAACATATTTCTCGTGATCTAC
CAACCTATACGTATTCGGGTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no101_g22.b1 MSMg01no101_g22.b1 CHROMAT_FILE:
MSMg01no101_g22.b1 PHD_FILE: MSMg01no101_g22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:59:38 2005
         (247 letters)



>mm_chr1_195620419_195621065
          Length = 647

 Score =  453 bits (234), Expect = e-132
 Identities = 243/246 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gctctgccagctgacagcagctttcaccttgaatccttcagtcacctttttctaaaaatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 gctctgccagctgacagcagctttcaccttgaatccttcagtcacctttttctaaaaatc 387

                                                                       
Query: 61  cctttgcagcaacgctaatagcaatagcttggccatcttgcctgtagttggagtatgtgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 cctttgcagcaacgctaatagcaatagcttggccatcttgcctgtagttggagtatgtgc 327

                                                                       
Query: 121 aagtagaggtgacttgaactacagaataaatgacctatccataggaccacactttaaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 aagtagaggtgacttgaactacagaataaatgacctatccataggaccacactttaaaaa 267

                                                                       
Query: 181 cagatgtagttttccatttcccacttcacagcatagatttgggacatggcctgatttcta 240
           ||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||
Sbjct: 266 cagatgtagttttccatttcccacttcacagtatagatttgggatatgggctgatttcta 207

                 
Query: 241 ggatga 246
           ||||||
Sbjct: 206 ggatga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)