Query= MSMg01no101_h10.b1 MSMg01no101_h10.b1 CHROMAT_FILE:
MSMg01no101_h10.b1 PHD_FILE: MSMg01no101_h10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:59:41 2005
(249 letters)
>mm_chr1_140968995_140969649
Length = 655
Score = 429 bits (222), Expect = e-125
Identities = 243/254 (95%), Gaps = 8/254 (3%)
Strand = Plus / Minus
Query: 1 agcaagaaccatctttgcattccacaagaacccagtgtgtgtttttctttgtggcagtga 60
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 453 agcaagaaccatctttgcattccacaagaacccaatgtgtgtttttctttgtggcagtga 394
Query: 61 ctgcaaatgccagacttgctttaattccacctaacacctgcgcacaggaactagacatga 120
||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 393 ctgcaaacgccagacttgctttaattccacctaacaccagcgcacaggaactagacatga 334
Query: 121 ctgctgactggggaagctttctgcactgacccacttagaaaaagattttttttttttt-- 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 ctgctgactggggaagctttctgcactgacccacttagaaaaagattttttttttttttt 274
Query: 179 -----agtttggattttttttttctgggaaaaagggttatgtgccctaaattttttctgt 233
||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 273 tttttagtttggattttttttt-ctgggaaaaagggttatgtgccctaaattttttctgt 215
Query: 234 ttataaatgtacta 247
||||||||||||||
Sbjct: 214 ttataaatgtacta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 655
Length adjustment: 9
Effective length of query: 240
Effective length of database: 646
Effective search space: 155040
Effective search space used: 155040
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no101_h10.g1 MSMg01no101_h10.g1 CHROMAT_FILE:
MSMg01no101_h10.g1 PHD_FILE: MSMg01no101_h10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:59:41 2005
(247 letters)
>mm_chr1_140818175_140818814
Length = 640
Score = 414 bits (214), Expect = e-120
Identities = 236/246 (95%), Gaps = 7/246 (2%)
Strand = Plus / Plus
Query: 1 gggaatataaataggctatcgagagagggaaagtcaggaacagaaactctagaatattta 60
|||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 gggaatataaataggctagcgagagagggaaagtcaggaacagaaact--agaatattta 258
Query: 61 cttgctttgaactgaaagagaggggagtcgaggaagctaacatttcaataacacttgact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 cttgctttgaactgaaagagaggggagtcgaggaagctaacatttcaataacacttgact 318
Query: 121 tttaaaatcatgcattcctatttgcttttctaaaggcggcctccccatgtcaaacttcct 180
|||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct: 319 tttaaaatcatgcattcctatttgcttttccaaaggctgcctccccatgtcaaacttcct 378
Query: 181 aaaatatgaaagaaagatacatgcacatgaggtcaacccaaaacccatcatgagcacagc 240
||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 379 aaaatatgaaaga----tacatgcacatgaggtcaacccaaaacc-atcatgagcacagc 433
Query: 241 gaccca 246
||||||
Sbjct: 434 gaccca 439
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 640
Length adjustment: 9
Effective length of query: 238
Effective length of database: 631
Effective search space: 150178
Effective search space used: 150178
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
