BAC Information

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BAC

Clone NameMSMg01-101H12
Chromosome1 (Build37)
Map Location 133,993,217 - 134,107,090
singlet/doubletdoublet
Overlap genePctk3, LOC100042221
Upstream geneMapkapk2, Dyrk3, Lgtn, Rassf5, Ikbke, Srgap2, LOC100042826, LOC100042821, 2700049P18Rik, Avpr1b, LOC667238, Ctse, 5430435G22Rik, Slc26a9, 4732466D17Rik, Slc41a1, Rab7l1, Nucks1, Slc45a3, Elk4, Mfsd4
Downstream geneLemd1, EG638532, Klhdc8a, Nuak2, Tmcc2, Ripk5, Rbbp5, Tmem81, Cntn2, Nfasc, Lrrn2, Mdm4, LOC638636, Pik3c2b, Ppp1r15b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-101H12.T7 (MSMg01no101_h12.b1)MSMg01-101H12.TJ (MSMg01no101_h12.g1)
ACCAG316874AG316875
length721721
length of high quality
(start - end)
298 (65 - 362)179 (76 - 254)
definitionCHROMAT_FILE: MSMg01no101_h12.b1 PHD_FILE: MSMg01no101_h12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:59:41 2005CHROMAT_FILE: MSMg01no101_h12.g1 PHD_FILE: MSMg01no101_h12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:59:41 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(134,106,793 - 134,107,090)(133,993,217 - 133,993,395)
sequence
TCTAAATTTGCGGCGCTATACGACTCCTATTTCGAGAAAGCCGCGGAATT
CATGAACTTACTACTCATTTCTTCAGGGTGAAAACGGATGCAGATAGCAG
CGGGCAAGCATCCAAGCTGACAGTTGAGTCAAAAGCATAGGATGTAGGTC
TGTCCTGGTTAAGCCTTCATGAATACCTTGTGCCAGGCATTAAGGAAGCT
CAGCTGGGAGAAGAGAGCCATCCTGACCATGACCAGTCAGTCCACTGCTG
TCTACAAAAACTGCGCATCATCTGTAATCCTCCGCCTTCAGGAAGCTCAA
GGAGGAGGATCAGATGTCTGATTTCACCCCAGGTAGCAGAGTAAGTACCT
AGGCCAGCCTGGGCACATACAGAAAGATCCTGCCTAAAGACCATAGTTTA
TCAATTCATGTACAGCTGTCACGTGACTTGCCTTAAACCAGCCCTTCCTT
ATAGAAGGCTGGCTTTGAGGCTATGGCTGATGGCTTAGGTTCTCTGTCCT
TTCTTTGGGGCCCCATTTCCTCGCAGTAAGTAGAATCTCTGCCCTACCCC
CTCCATCCTTTTTAGAGCTCTATTGATATATAATTCATAACACCTGGCAA
TCTTTGTTCTGAATGCCGCTCAGACTTCCTTTCCTTGCAAGACCGACAAT
CCCGCATTCTGTCTTTAGTTCTGAGAACCCCTAGTAAGATCTTTATTTCA
TCTTAAGTCACTGTAACCCGC
CAATGCTGTXXXXXXXXXXXXXXXXXXXXXTTTTCAAACATGGAGGTGAC
CTATAGAAGTATTTCGAGTAATTCCATTTCTTCCCTAGATCCTCAGATGC
AAAGATCCAGGGATCCACAATCTGCATGTCTGTCTCCTTCCCATACCCCA
CCACTCAGCACTGGAAGCTGAGCCTAAGGAGGCAGAGGCCTGGCTTAAGA
GACACTGGCGGACATACCCTCCTATCCAGCCAGTGCTGCCTCCTCCTGGC
CCGTATTCACAGAGAGGTTTAGCAAGAGGATAAAGCCCAACCTGGCAACT
CTGATCCCTGGCTTTCTTTATCTTCTTTACTTGCAGCCTGGGTGCTAAGG
ACTAATCTTGTATGTGTCCCGCCCCCTACCCGAGACTCCGGACTAATTTA
GATTCCCCCTACACTCAAAATCTTCCGTCAATTAGGCAATCGCGACCAAC
ATTTACTGATCCCCTAATGTGTGCCTAGCCTCTTCTGAGCCGGGAAGTGA
TGACTTCTATACTACTTGTCCTTACTATACTGACGACCTTGTCGTGCTAT
CTACTTCGCCTGCCCCCTCCGGATATCGATTCTATGTCCTTTTCCCCTGA
CTCGTCCTGTTACGTCATCGCTGCCACTCCTCACTTTTGTAACCTATTTA
AACTTTGAATCCGCTCTCGCTCTAATGCATCCCATCCGTATCCCTTTTTG
TCATTTCTCCACCTGATACCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no101_h12.b1 MSMg01no101_h12.b1 CHROMAT_FILE:
MSMg01no101_h12.b1 PHD_FILE: MSMg01no101_h12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:59:41 2005
         (298 letters)



>mm_chr1_134106693_134107390
          Length = 698

 Score =  538 bits (278), Expect = e-157
 Identities = 293/298 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcatttcttcagggtgaaaacggatgcagatagcagcgggcaagcatccaagctgacagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 398 tcatttcttcagggtgaaaacggatgcagatagcagcgggcaagcatgcaagctgacagt 339

                                                                       
Query: 61  tgagtcaaaagcataggatgtaggtctgtcctggttaagccttcatgaataccttgtgcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 tgagtcaaaagcataggatgtaggtctgtcctggttaagccttcatgaataccttgtgcc 279

                                                                       
Query: 121 aggcattaaggaagctcagctgggagaagagagccatcctgaccatgaccagtcagtcca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 aggcattaaggaagctcagctgggagaagagagccatcctgaccatgaccagtcagtcca 219

                                                                       
Query: 181 ctgctgtctacaaaaactgcgcatcatctgtaatcctccgccttcaggaagctcaaggag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 ctgctgtctacaaaaactgcgcatcatctgtaatcctccgccttcaggaagctcaaggag 159

                                                                     
Query: 241 gaggatcagatgtctgatttcaccccaggtagcagagtaagtacctaggccagcctgg 298
           |||||||||||||| ||   ||||||||||||||||||||||||||||||||||||||
Sbjct: 158 gaggatcagatgtccgaggccaccccaggtagcagagtaagtacctaggccagcctgg 101


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 298
Length of database: 698
Length adjustment: 9
Effective length of query: 289
Effective length of database: 689
Effective search space:   199121
Effective search space used:   199121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no101_h12.g1 MSMg01no101_h12.g1 CHROMAT_FILE:
MSMg01no101_h12.g1 PHD_FILE: MSMg01no101_h12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:59:41 2005
         (179 letters)



>mm_chr1_133993017_133993595
          Length = 579

 Score =  339 bits (175), Expect = 8e-98
 Identities = 178/179 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttcttccctagatcctcagatgcaaagatccagggatccacaatctgcatgtctgtct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atttcttccctagatcctcagatgcaaagatccagggatccacaatctgcatgtctgtct 260

                                                                       
Query: 61  ccttcccataccccaccactcagcactggaagctgagcctaaggaggcagaggcctggct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccttcccataccccaccactcagcactggaagctgagcctaaggaggcagaggcctggct 320

                                                                      
Query: 121 taagagacactggcggacataccctcctatccagccagtgctgcctcctcctggcccgt 179
           ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taagagacactggtggacataccctcctatccagccagtgctgcctcctcctggcccgt 379


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 179
Length of database: 579
Length adjustment: 8
Effective length of query: 171
Effective length of database: 571
Effective search space:    97641
Effective search space used:    97641
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)