BAC Information

Click to search

BAC

Clone NameMSMg01-101I14
Chromosome1 (Build37)
Map Location 187,881,894 - 187,882,141
singlet/doubletsinglet
Overlap genenone
Upstream geneIars2, Bpnt1, Eprs, 9630028B13Rik, LOC100039138, Slc30a10, 5033404E19Rik, LOC677785
Downstream geneLyplal1, Tgfb2, Rrp15, LOC666832, LOC100042375, D1Pas1, Spata17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-101I14.T7 (MSMg01no101_i14.b1)MSMg01-101I14.TJ (MSMg01no101_i14.g1)
ACCAG316923AG316924
length8011,298
length of high quality
(start - end)
251 (120 - 370)---
definitionCHROMAT_FILE: MSMg01no101_i14.b1 PHD_FILE: MSMg01no101_i14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:59:47 2005CHROMAT_FILE: MSMg01no101_i14.g1 PHD_FILE: MSMg01no101_i14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:59:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTTTTTTTTTTTTTNTTTTTTTTTTTTCCCCNNCCCCCCCATACANAA
CCTCTATAATTGCGGCCGCTAAACGATCACTATTCGAAAGGATGCGCGGA
ATTCTCTAATTCTCTACTGCTAGCTATGACTCAGATTCTGTCCGCTGTTA
CTTTTTAACTTTCTTTGTAACTGACTAGGTTAAAATGGTAAAATCGTTTG
CACACTGTCCTTTGTATTTGCTGGGTATGTATATGTATCCACTATTTCCT
ATTCCTAATCTCTTATCTCAAAGTTCAGATCCCATCTCCTCACAAAACAC
TAACCCACGTGAACTGCTCTCCTTCAGTGTATAGGGCCCAGTCTTGCTCG
GCTCTCCTTTCCTGCTTTTGTTTGGCCCAGTTTTGCTCGCCTCTCCTCTC
CTGTTCTGGCTCCCGCTCCTCTGTCACAGTGTGAGCAGCACAGACATTGT
GAAGTACTGCTCTTCTTTACTCTCATCTACTACATTGAACGGATTCCCAT
AGACTATTTGGTTTCCCTCTTTGCCTTAGAGCTTGCAAAATATATTTGCC
TATTTTTTTTTCCACCATTTCCCTATATTAAACTCTTACTACCAAAAATT
TCCCTGTTTCATCCTTGCAAATATTAATATTTCGCTTTCTCTATGGCCTA
TAGTCCCCCTCCCCGCCTCTCTTAATATTAGACTTCTAATCCATTTACCA
AAAATCTACATGATGGACTATTTATCTCCCCACCCTTGGACACACCCCAG
TTAGACATGCCAACCACTTCGCCAATCGGGCGCAGCAATCCCAGAAGTCA
G
TTTTTGGTATTTCCNNTNCCNNNNNNNNNNNNNNNNNNNTCNNCCTNNNN
NNNCNNCCTTTTTTTTTTTTTTTNNTCTTATTTCTTNTTGNNNTTNNNCC
TTGGNCNNNCCCGCCTGGNTTTCCCACACANNNGGNNNNNNNNNCNNANN
NNANANNGATCCCTCNNNNAATTTCNNTGNNNNCNTNNNNNNNAATTNNN
CNNNATCTCNNTCTNNTTTTTTCTTTNNNTTTTTNCNTGNNTTCCTTCTC
NATNNNCNNTCTTGTNNTTTCTTTTATAATTAATCAGGATTCTAGGTAGA
GGTAAAGAGAAGACTAGAAAAAGAAAAGAGAGGGGAGGGGGGGGGGGGGG
GGGTNNNNNNNCCCNNNCCCNNNNNNCCNNNNNNNCCCCCNGNNGNGGGG
GGGGAGGGAGGGGCCTTNNNNNNNNNNCCNTNCCCNCCNCTNNCCNCCCC
CCNCNNNTCCCCNNNNNNNNNNNNGNNNCGCGCGGGAGAAGGGGAAAGGA
GGGCTAGAGGAGGGCCCCGGCCCTCNCAGCTCTCNCCCGCNCCCTAGTCC
NCNAGTTNTAGGGGCTCTNTNNNNNCNCNTCNNCNTCNTNTCTTTCTCTN
NNCNTTCCNNTTTNCTTTCTTTTTTCTTCTCTCTTCCTCTCTCTCCCTCT
TCCTCTCTCTTTCCTCTNCTCCTCTTCTTCCCTCTAGGAGGCTAGGGGAG
AGAGGGGGGTCGTTCTGGGGNNNNNNTNCNCNCTCCNNCCTCTTNTCATC
AAATACATATTAATATTGTGAGAGGGGGCTATTCTTNNNNNCNCNNNNCN
CNCNCACGGCGCGGGGAGTAGGGATTTCTTCCNCCNCNCCNCCTNTCCTT
CNNNNTCTTCCTTTTTCTTTCTTCTCCCTNCTCTNNCTTTTCTCCTCTTN
CTCNTCTTTTTNACTTTACACAGAGGGGTGGATGAGGGGGGGTGCTAGGG
CCNCNCNCCCCNCCNCNNCCCCCCCCNCACTTTCCCTTTTCTTTTTTCNC
TTCTTTCTNNCTTTCTTCTCTNCTTTTTCCCTCCTTTCTTTTCTTTCTCC
TTTCTTCTTCTTTCTCTTNCTTTCTCTTCTTTTTCTNTTCTTTTTCCTTT
CTTCTCTTTCTCTTTTTTCCTCTCTTTTCTTTTCCTTTCTCTTCTCCTTC
TTTCTTCTCTCTCTTTCTTTCTTCCCTTCCTTCTTCTCTTTCTTTTTTTC
TTTTTATATTTTTTCTTCTTCCTTCTTCTCTTTTCTCTCTCTTCTTTTTT
TATTTTTTTCTTCTNCATTCCATATAGATGGTGGAGGTGAGGGTGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no101_i14.b1 MSMg01no101_i14.b1 CHROMAT_FILE:
MSMg01no101_i14.b1 PHD_FILE: MSMg01no101_i14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:59:47 2005
         (251 letters)



>mm_chr1_187881694_187882344
          Length = 651

 Score =  410 bits (212), Expect = e-119
 Identities = 239/248 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctagctatgactcagattctgtccgctgttactttttaactttctttgtaactgactagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 201 ctagctatgactcagattctgtccgctgttactttttaactttctttgtaactgacttgg 260

                                                                       
Query: 61  ttaaaatggtaaaatcgtttgcacactgtcctttgtatttgctgggtatgtatatgtatc 120
           |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct: 261 ttaaaatggtaaaatcgtttgcacactgtcctttgtatttcctggggatgtatatgtatc 320

                                                                       
Query: 121 cactatttcctattcctaatctcttatctcaaagttcagatcccatctcctcacaaaaca 180
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cactatttcctattcccaatctcttatctcaaagttcagatcccatctcctcacaaaaca 380

                                                                       
Query: 181 ctaacccacgtgaactgctctccttcagtgtatagggcccagtcttgctcggctctcctt 240
           | |||||||||||||||||||||||||||||| |||||||||| ||||||| ||||||| 
Sbjct: 381 ccaacccacgtgaactgctctccttcagtgtagagggcccagttttgctcgcctctcctc 440

                   
Query: 241 tcctgctt 248
           ||||||||
Sbjct: 441 tcctgctt 448


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 251
Length of database: 651
Length adjustment: 9
Effective length of query: 242
Effective length of database: 642
Effective search space:   155364
Effective search space used:   155364
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)