BAC Information

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BAC

Clone NameMSMg01-101O09
Chromosome1 (Build37)
Map Location 15,765,699 - 15,766,007
singlet/doubletsinglet
Overlap genenone
Upstream geneSmt3h2-ps4, EG665407, Trpa1, EG269105, LOC100039949, LOC100039959, Kcnb2, Ppia-ps1_109.1
Downstream geneTerf1, Gm106, LOC665434, 4930444P10Rik, Rpl7, Rdh10, EG665282, Stau2, Ube2w, Tceb1, LOC665480, Tmem70, Ly96, LOC100040056, LOC665496, EG545306
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-101O09.T7 (MSMg01no101_o09.b1)MSMg01-101O09.TJ (MSMg01no101_o09.g1)
ACCAG317188AG317189
length7221,006
length of high quality
(start - end)
314 (44 - 357)---
definitionCHROMAT_FILE: MSMg01no101_o09.b1 PHD_FILE: MSMg01no101_o09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:18 2005CHROMAT_FILE: MSMg01no101_o09.g1 PHD_FILE: MSMg01no101_o09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCTTCTTCCCAGTTAACCTCTAGTAGTTGTTCTCTGAAACCAGAGGGC
CCTGGGCTTCCTGACTGCTGAACAGGAAGGGACAAATATTCCTCAATGTC
AGCAACCTGTCATTACAGGCACAGTGCAGTAGTTGCATGACCTACCCAGA
AGAGGCCCCCAAGGAAATGGAAGACACAGTTCTCTTGTCCTCCAACACTC
TAAATATCTGGGGTATCAACTTACAAAGACAAAGGCTGACTTTACCTCAC
AGTTTGAAAAGTCCTACTAGGGTTTCTTGGTTTTGTGGCCTCTAAGCAGG
CAGCATAGGAACCCATTGCCAGCATGCGGCAGAACAGAAATGCACATCTT
GTGCCTCAAAAGAAGAAAGGGCTGGGACTGAACTATGCCCTATAAAGCCT
TTCCTCCTGAAACCTAACTCTCCCACTAAGTCTGCTACACTGGGGACCAA
GCATTGAACACTTGGGCCTTTGGGAAATACTTAACATTCAGACTGTAGTA
CTGTAAGTGAATCTACTGGTGTGTACTGATGTTTAACAACTCTTAGCAAT
CTTCAAGCACACAGTTTTAAATGTTAAGGCTAATTAACCAGTAATGTCCT
CACTTATTCATTTTGTGTGCTAATAGGGGCACATACAGGAACTACAAGAA
ATGACTCTCAATGGAGGAAGAA
TCCCGTACTTTGTTTCGTCTTTTTTTAAATTATTCCACCGCNNCCCCCTT
CTATTGTTTNTCCAATGCCTATXXXXXXXXXXXXXXXXXXXXXTTTCAAA
AAATGGAGGTGACACTATAGAATGTTCCCTCGAAATTCCAAGGGTCCACA
TGAAACGATCTTCAGGTGTCTCTAGGTACTCTGTGTCTCGACATGTGAAC
AGGCAGCCTAAGTCCTGCNTGTGCTATAGCTTATTGGGGTTAAATTCGCT
ATATGTGTGGACTAGTACAAAAGCAACCTATCTAGCCTCTCTATAGGCTT
GATTGGCTATGGGATATCAGGGCACCATCCTGATGAAGGGGCATTATTTT
TCCCTACCATCTGATCTGTATATCATTTTCCTTCTATTAATATGCCTTTT
GAGAAAATAATCTACAATCAATTACCTGTTTCTTTCATTCCAAGCAAGAA
ACGCATCTTTCCATTTACCCTGACATGAATTATCACCCTAAACCACTCTC
TTACCTCTCTAACCTCTTGAGTGTCTACTACATATGATATAAATATGAAC
CCTCAATCATAATGTTCATGATGGTATCCCCTATTTCTATCTGCAAAACG
TCTTGTGGTTCCACTTTATTGTATAGTTCGCTTATGTTAGGCGTCTGTAT
AAATATCATAAGACAATGGACTTTGCCTGGCCCTCTTGCTCGATTGCTCT
TTATAGTTGGTTTTCCTTTCTTGTTTCTACTCTCCAAGCTAAAACGTTTT
CCTTTCTGTATTCATCAGTGTAGTCCCCTTCCGTTTCCCCTCCTATCCAA
GTGCGCATCTGCCTCCTTTGTTCTCCTTCACGTACTATTCAAAGGACTTC
ATCTTTCCCTGAGCTTAATGGACTCACACATGGTTTATCCTCAGCTATAT
ATCTGTTAATCCTTATTATCATAAAATACCTTTCCCCAAACTCGTTATGG
TTACTACTGTTATTTGTCCTGTTCGTTATGCTCTTTTAATTTTGCCTCTG
TTATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no101_o09.b1 MSMg01no101_o09.b1 CHROMAT_FILE:
MSMg01no101_o09.b1 PHD_FILE: MSMg01no101_o09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:00:18 2005
         (314 letters)



>mm_chr1_15765496_15766209
          Length = 714

 Score =  567 bits (293), Expect = e-166
 Identities = 305/309 (98%), Gaps = 1/309 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccttcttc-ccagttaacctctagtagttgttctctgaaaccagagggccctggg 63
           ||||||||||  | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattccttcaacgccagttaacctctagtagttgttctctgaaaccagagggccctggg 263

                                                                       
Query: 64  cttcctgactgctgaacaggaagggacaaatattcctcaatgtcagcaacctgtcattac 123
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cttactgactgctgaacaggaagggacaaatattcctcaatgtcagcaacctgtcattac 323

                                                                       
Query: 124 aggcacagtgcagtagttgcatgacctacccagaagaggcccccaaggaaatggaagaca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aggcacagtgcagtagttgcatgacctacccagaagaggcccccaaggaaatggaagaca 383

                                                                       
Query: 184 cagttctcttgtcctccaacactctaaatatctggggtatcaacttacaaagacaaaggc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cagttctcttgtcctccaacactctaaatatctggggtatcaacttacaaagacaaaggc 443

                                                                       
Query: 244 tgactttacctcacagtttgaaaagtcctactagggtttcttggttttgtggcctctaag 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tgactttacctcacagtttgaaaagtcctactagggtttcttggttttgtggcctctaag 503

                    
Query: 304 caggcagca 312
           |||||||||
Sbjct: 504 caggcagca 512


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)