CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCATAGTACCAAGTTGTGGCATACGCTTATAATCCCAGCCCTGGAAA
GGCAGAGCTAGGAAGGTGTCTGGAGCTCCCAGAGAGACAGCTTAGCCTAC
TGAACTCCAAACAATGAAAGACTTTCTCTAAAAACATGAAGTAGACAGCC
TAGGTTGTCTTTGGGCTTTCTCACACACAAGCATGCCACCATACCCCTGC
TGTGTGGATCCAGAACTCACACTCTAGGTCTTCACACTTGCAAGGCAAGC
ACTTTGCTGACTGAGCTGTCTCTTAGGCCAATAGGGAAGGTTTTAATTTA
GTGCATTCCTGTAAACTTTGTATTTACATATATGTAACAATAAGTCATAC
ATAAATACAATTTACAAGCTTATAAATAAGAAAAATGTGTCCTAAAAGAA
AATACTCACATTGAACTTTGTTTAAAAATTTTCAATACTTATAAGGTAGA
TAATCCTTTAGCCATCAATTGCGTTTTTGAGATACTATTTAATTCTGATT
AAAATACAGAACTTTGGTAAGTAATTTACCAAACATAAGTGAAATTATCA
TTTCTTCGAAGGTGCTTATTTGTCCTGATCATGATTACCGTTGTAAGTGA
ATTATATCATATCTTGTATTTTACAAAATAAAAGTTAAGTGTCCTTATTT
GACATAAAGAACAGTGATATTTATC

TATAAAGTATAATTTATGGTGTCTATATGACCCCCCATCCCCCCCCTTAC
TTNNTTTCGATGATATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTATGTCTTCCTTAAAGGT
CTCTAAAATCATCTTCATGAGATGGAATTTCAGGTCAGAATCTTGCTTTT
TCATATGTGTTAGTGTGTCTAGGACTTGCAATGGTGGGAGAACTGGGTTT
TGAGGGTTTCAAGTTACTTTGACTTCTGTTGCTAATGTTCTTGAGCTTGC
CTCTCAGCATCTGGTTATCTCTTGTGTTAACTGGCCTCTTTGTCTCTGAT
GGGAGCTTCTCCCTTCTTCTAGGTAGTTATAGTTCTCTGAGTTGTGTTAG
AGCAGACCTTCTGGTTCTGGATAGGTGGGCCTCCTCTGTTCCTAGTTAGG
ATAGACCTCCTGTGTCCCTGGTTATGCCAGACATCCTGAAAGACATGAAG
TCTGTGTCCCTGGTTACAGCAGACCTCCTGGTAGACAGACAGGCTCAGGG
GTATGGGAGAGGGTCAGGAGAGCCTGATCTGCCCCAGGCTGAGTTGCATA
CTGGAAGGAAGATGAGGCTTCAGTACAATGTATAGAACTGGGGCTCCTTG
GAAGTGTCACCTGGGGAACATATTATGGTAAGGTTTCTATGTACTTCTTG
CACTTGGTATAAGAGACTTCCTGAGAGGCCGAACCCCTCTATGATGTGGT
AGGGTGAAAAGAACTATTTACTTTCGTGAAGAAAAACTCTATC

Query= MSMg01no101_o15.b1 MSMg01no101_o15.b1 CHROMAT_FILE:
MSMg01no101_o15.b1 PHD_FILE: MSMg01no101_o15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:00:19 2005
         (647 letters)



>mm_chr1_119023353_119024399
          Length = 1047

 Score = 1243 bits (643), Expect = 0.0
 Identities = 646/647 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggcatacgcttataatcccagccctggaaaggcagagctaggaaggtgtctggagctcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggcatacgcttataatcccagccctggaaaggcagagctaggaaggtgtctggagctcc 260

                                                                       
Query: 61  cagagagacagcttagcctactgaactccaaacaatgaaagactttctctaaaaacatga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagagagacagcttagcctactgaactccaaacaatgaaagactttctctaaaaacatga 320

                                                                       
Query: 121 agtagacagcctaggttgtctttgggctttctcacacacaagcatgccaccatacccctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtagacagcctaggttgtctttgggctttctcacacacaagcatgccaccatacccctg 380

                                                                       
Query: 181 ctgtgtggatccagaactcacactctaggtcttcacacttgcaaggcaagcactttgctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgtgtggatccagaactcacactctaggtcttcacacttgcaaggcaagcactttgctg 440

                                                                       
Query: 241 actgagctgtctcttaggccaatagggaaggttttaatttagtgcattcctgtaaacttt 300
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 actgagctgtcttttaggccaatagggaaggttttaatttagtgcattcctgtaaacttt 500

                                                                       
Query: 301 gtatttacatatatgtaacaataagtcatacataaatacaatttacaagcttataaataa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtatttacatatatgtaacaataagtcatacataaatacaatttacaagcttataaataa 560

                                                                       
Query: 361 gaaaaatgtgtcctaaaagaaaatactcacattgaactttgtttaaaaattttcaatact 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaaaaatgtgtcctaaaagaaaatactcacattgaactttgtttaaaaattttcaatact 620

                                                                       
Query: 421 tataaggtagataatcctttagccatcaattgcgtttttgagatactatttaattctgat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tataaggtagataatcctttagccatcaattgcgtttttgagatactatttaattctgat 680

                                                                       
Query: 481 taaaatacagaactttggtaagtaatttaccaaacataagtgaaattatcatttcttcga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 taaaatacagaactttggtaagtaatttaccaaacataagtgaaattatcatttcttcga 740

                                                                       
Query: 541 aggtgcttatttgtcctgatcatgattaccgttgtaagtgaattatatcatatcttgtat 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aggtgcttatttgtcctgatcatgattaccgttgtaagtgaattatatcatatcttgtat 800

                                                          
Query: 601 tttacaaaataaaagttaagtgtccttatttgacataaagaacagtg 647
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tttacaaaataaaagttaagtgtccttatttgacataaagaacagtg 847


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1047
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1037
Effective search space:   660569
Effective search space used:   660569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)