BAC Information

Click to search

BAC

Clone NameMSMg01-101O22
Chromosome1 (Build37)
Map Location 11,237,084 - 11,237,576
singlet/doubletsinglet
Overlap genenone
Upstream geneCpa6, LOC433271
Downstream geneC030045D06Rik, A830018L16Rik, LOC665262
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-101O22.T7 (MSMg01no101_o22.b1)MSMg01-101O22.TJ (MSMg01no101_o22.g1)
ACCAG317214AG317215
length768771
length of high quality
(start - end)
473 (107 - 579)492 (142 - 633)
definitionCHROMAT_FILE: MSMg01no101_o22.b1 PHD_FILE: MSMg01no101_o22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:21 2005CHROMAT_FILE: MSMg01no101_o22.g1 PHD_FILE: MSMg01no101_o22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNNTTTTTTTNNNNNNNNTTTTTTTTNNNCCTTCTNTNCCCCCATAT
TAGTATCATCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCCTGACTTGCCCCAATAATTTTGGAAAGGTTTAAGA
AGATGGTTTTAGTTGTATTGAAAGAAAGATAAAATAAACTTAGCAAAAAA
AATAGAATGTGCCCAATCTTCAAAGAGTAGAAAGTAAAGGCTGTATAATA
AAGAGTACAATGAGCTCTCACAGTTACACCAAGAAGAGAAATAGGCTTGG
GATAGAATTGCGACCAAGAAAAAAAATTATTCATTCTAGGTCAGGTCCAA
GGATGAAGATCCAGGTGAGCACTATGACAAAGTTTGGACACGTGAAACTG
TTGCTTTGAACTTGTAGTGAGCTTACAGAATGAAACACTGCTTTGAACTT
ACTGTTGGGATCCTTCTGTAACTCCCCTTTTGTACAACATTTTATCTCTG
AAATAATTTTATAAGAACTTTTGTCTAATAAGGTATAAAAGGTCTGAGAG
ACAATTAATTGTGGCTCAGTCTATCTATCATATATAAATGTGCCTATATA
CCTGTGTATATATGTCTGTCTGTATCTCTGTCTATAAGTAAGTACAAGAC
ACATATATCTATATATGCCTATTTGCCCCCATGTATATGCCTAACTCTAT
CTTCAGCCCAATGTGCATAAACCATGCATTTTATCCTTGAGAAATTGAAG
CAACTGGTGTCTGGGCCA
NNNNNNNNNNNNNNNNNNNNNNNNNNTTTTNTTTTNNTTTCCCCCCCCCN
CCCCTTCTCTCNCNCCCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTAATGTAA
TATTTTAGTAAGGAGAATATGGGAGATTAAAATTACTAGCCTATGGGGTT
TCAGATTTTTGTAATAAATTCTGCATGTGGTGATATTTATGAGGATAAAT
ACTTCATAGTCTGACAAATAGAAGCAGATAAAAATCATGCTCATCTTCTA
AGAGAATCATCTCTATCGAGGCGCTAAGACACTCTCTTGTTTTCTATCTT
GCACTAAGGAAAAGCTGCTGTCTTCCATCTCCCAACTAATAAAAGACACT
TTGTTTTTGCCAAAAGAAAAGGGAGATGGAAGTACTCTGTGCCTAGAGCC
TCTTTTGGATTAAATGCAATTTGAAGGTGCCAACAAACAACTAAGCACAT
CCTCAAAGCATCCCTTAGTGAAGGGATGTACTGTGTGGCAGAAAATGACC
AGTACTTACAGAAGCAAAATTGATTTTTAACTGCTGACTTTGTATCTAAT
GACAAGGACAGACTTTAAAAGGTGGATTCAAGGTATCTTAATCAATCTTT
GTGATGAGTATTTTTTTTTTCAAATTGCTTTTGTTTGGCCCCTTTTTGCT
GACATTTCAGGTTTGTTTTCTTTTTTTTTTTTTGGTGGATGTAACATGGA
CGGATGACTATCAATTTTGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no101_o22.g1 MSMg01no101_o22.g1 CHROMAT_FILE:
MSMg01no101_o22.g1 PHD_FILE: MSMg01no101_o22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:00:21 2005
         (492 letters)



>mm_chr1_11236881_11237776
          Length = 896

 Score =  857 bits (443), Expect = 0.0
 Identities = 479/493 (97%), Gaps = 4/493 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   atgtaatattttagtaaggagaatatgggagattaaaattactagcctatggggtttcag 63
           |||||||||||||||||||||||| ||||||||| |||||||||||||||||| ||||||
Sbjct: 204 atgtaatattttagtaaggagaatgtgggagattgaaattactagcctatgggttttcag 263

                                                                       
Query: 64  atttttgtaataaattctgcatgtggtgatatttatgaggataaatacttcatagtctga 123
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 attattgtaataaattctgcatgtggtgatatttatgaggataaatacttcatagtctga 323

                                                                       
Query: 124 caaatagaagcagataaaaatcatgctcatcttctaagagaatcatctctatcgaggcgc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 caaatagaagcagataaaaatcatgctcatcttctaagagaatcatctctatcgaggcgc 383

                                                                       
Query: 184 taagacactctcttgttttctatcttgcactaaggaaaagctgctgtcttccatctccca 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 taagacactctcttgttttctatcttgcactaaggaaaagctgctgtcttccatctccca 443

                                                                       
Query: 244 actaataaaagacactttgtttttgccaaaa----gaaaagggagatggaagtactctgt 299
           ||||| ||||||||||||||||||||||| |    |||||||||||||||||||||||||
Sbjct: 444 actaagaaaagacactttgtttttgccaacattttgaaaagggagatggaagtactctgt 503

                                                                       
Query: 300 gcctagagcctcttttggattaaatgcaatttgaaggtgccaacaaacaactaagcacat 359
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 504 gcctagagcctcttttggattaaatgcaatttgaaggtgccaacgaacaactaagcacat 563

                                                                       
Query: 360 cctcaaagcatcccttagtgaagggatgtactgtgtggcagaaaatgaccagtacttaca 419
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct: 564 cctcaaagcatcccttagttaagggatgtactgtgtggcagaaaatgaccagtgcttaca 623

                                                                       
Query: 420 gaagcaaaattgatttttaactgctgactttgtatctaatgacaaggacagactttaaaa 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gaagcaaaattgatttttaactgctgactttgtatctaatgacaaggacagactttaaaa 683

                        
Query: 480 ggtggattcaagg 492
           |||||| ||||||
Sbjct: 684 ggtggactcaagg 696


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 896
Length adjustment: 10
Effective length of query: 482
Effective length of database: 886
Effective search space:   427052
Effective search space used:   427052
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)