BAC Information

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BAC

Clone NameMSMg01-102C08
Chromosome1 (Build37)
Map Location 58,615,464 - 58,615,847
singlet/doubletsinglet
Overlap geneBC049806
Upstream geneLOC667339, 2810022L02Rik, Kctd18, Sgol2, Aox1, Aox3, Aox4, Aox3l1, EG628262, Bzw1, Clk1, Ppil3, Nif3l1, Orc2l
Downstream geneNdufb3, EG667397, Als2cr12, Cflar, LOC100042431, Casp8, EG667419, Trak2, Als2cr2, 4930408G06Rik, EG667447, Als2cr11, Als2cr4, Mpp4, Als2, Als2cr7, Fzd7, Gm973
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-102C08.T7 (MSMg01no102_c08.b1)MSMg01-102C08.TJ (MSMg01no102_c08.g1)
ACCAG317373AG317374
length678682
length of high quality
(start - end)
363 (42 - 404)382 (67 - 448)
definitionCHROMAT_FILE: MSMg01no102_c08.b1 PHD_FILE: MSMg01no102_c08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:38 2005CHROMAT_FILE: MSMg01no102_c08.g1 PHD_FILE: MSMg01no102_c08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACCTATAATTGCGGCGCTATACGACTCCTATTCAAGAGGACCGCGGAATT
CACCCCTTTCCTATTATTGCTTGCCTATGATGGAGTTTGAGAGAGTAATA
GGGACCGACTGTGGCGCTTGAAGGAGATATTCCCCACAGTCTTGTGCATC
TGAATACCTGGTCCCAGCTGGTGGCACTATTTAGGTAGGGTTAGAAGGCG
TGGCCCCGCAGGGGGACAAATGCCTACCTGGTGCCACTGTTTAGGGAGGG
TTGGGAGGCGTGGCCCTACAGGAGGATGAATGTCACTCTGGTAGGGTCTG
AGAGTTTAAAGACTTATGTTCTCTGCTTTGTGCTTGTGGTTTGCGATGTG
AACTCTCTGCTTCTGCTCCAGCAGCCTTGCCTGCTACCTGCTGCCTTTGC
TCCAGCATCATGGACTCTAACCCTCAGGAACTGCAAAGCCCAAGCCAACT
ATTCTGTCACTGCCTTGGTCATGTTGTTTTGTCACAGCAACTGGAAAGGA
AATATCACCCTGGCCCATTACTACGTTGAACAGAAAGGTTAGACCTTGCT
ACCTAATAGTCATTAGCAATTGACTTATATCGCCGAATAACTTTAATCTA
ACACTCATCACGCTGAGGGAGGCATATGCCTGTAACTTAACGTCCCGTTG
TGTCCCCATAATCCACTTCTACCCCACC
TCGATGAAGTGGGAGGCCTGGCGGCGCCTGGTCACAAATTGGAGGTGAAC
TATAGAATTTCAGCGGAATTCTAAGTTAGAGTTTTTTTGTGGAATTTTAA
ATTAGAAATTTAGTTGGCGGTGGTAATAAGAGAGTGCAGCATGGGGAACT
AAGATCAAGGTTCATCATATACATATATGGAAATGTCGTAATAGAACCAT
TGTTTGTACAAGTAATACACATTACTACTTTTAAAATTTAGTGCGGAATT
CAACAAACATAGAAAGGGCATCTTTTTAGTAAGAGAGTGTTTCAGTTATT
TCATAGACAATCCTGCTTCTTCAGGTTCTATTTTCATTTGTCTTGGTTTT
TTTCCTTATTCTTTCCTTTTGAATGACAAAGAAGATTGAAATACAGTGCA
TCTTATTTTTAATCCAAAATTAAATAGATAAGACTACCCTCAATAGCAAG
CATTTAACAATTGACCATGTATTTTTTCCAGGCTTTTTTAAAAAAGTAAG
CTTTAATTGGAATTACAATTTACAGACTATTATTCAGTTTGATTTTGCTA
CTTAATCAGCTTGCTACCCTATATGACCCTTGCTTTTTTTAGATTTGACA
TCCTTTCTTCCCGTTGTTGCTGTTGTTGACGATCCACGGTGTTGCTGTGT
AACCCAGGGCTGCCCTCATTGTCCACTGCATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no102_c08.g1 MSMg01no102_c08.g1 CHROMAT_FILE:
MSMg01no102_c08.g1 PHD_FILE: MSMg01no102_c08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:00:38 2005
         (382 letters)



>mm_chr1_58615264_58616047
          Length = 784

 Score =  692 bits (358), Expect = 0.0
 Identities = 377/384 (98%), Gaps = 2/384 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aattctaagttagag--tttttttgtggaattttaaattagaaatttagttggcggtggt 58
           |||||||||||||||  |||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 584 aattctaagttagaggttttttttgtggaattttaaattagaaatttagttgggggtggt 525

                                                                       
Query: 59  aataagagagtgcagcatggggaactaagatcaaggttcatcatatacatatatggaaat 118
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 524 aataagagagtgcagcatggggaactaggatcaaggttcatcatatacatatatggaaat 465

                                                                       
Query: 119 gtcgtaatagaaccattgtttgtacaagtaatacacattactacttttaaaatttagtgc 178
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 464 gtcataatagaaccattgtttgtacaagtaatacacattactacttttaaaatctagtgc 405

                                                                       
Query: 179 ggaattcaacaaacatagaaagggcatctttttagtaagagagtgtttcagttatttcat 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 ggaattcaacaaacatagaaagggcatctttttagtaagagagtgtttcagttatttcat 345

                                                                       
Query: 239 agacaatcctgcttcttcaggttctattttcatttgtcttggtttttttccttattcttt 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 agacaatcctgcttcttcaggttctattttcatttgtcttggtttttttccttattcttt 285

                                                                       
Query: 299 ccttttgaatgacaaagaagattgaaatacagtgcatcttatttttaatccaaaattaaa 358
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 284 ccttttgaatgacaaagaagattgaaatacagtgtatcttatttttaatccaaaattaaa 225

                                   
Query: 359 tagataagactaccctcaatagca 382
           ||||||||||||||||||||||||
Sbjct: 224 tagataagactaccctcaatagca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 784
Length adjustment: 9
Effective length of query: 373
Effective length of database: 775
Effective search space:   289075
Effective search space used:   289075
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)