BAC Information

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BAC

Clone NameMSMg01-102G16
Chromosome1 (Build37)
Map Location 32,673,396 - 32,800,878
singlet/doubletdoublet
Overlap geneKhdrbs2
Upstream geneLOC624275, LOC666056, LOC100041238, EG408191
Downstream geneEG633498, LOC213711, LOC100040828, EG666108, Prim2, 1700001G17Rik, Rab23
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-102G16.T7 (MSMg01no102_g16.b1)MSMg01-102G16.TJ (MSMg01no102_g16.g1)
ACCAG317568AG317569
length697706
length of high quality
(start - end)
242 (66 - 307)180 (122 - 301)
definitionCHROMAT_FILE: MSMg01no102_g16.b1 PHD_FILE: MSMg01no102_g16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:01:00 2005CHROMAT_FILE: MSMg01no102_g16.g1 PHD_FILE: MSMg01no102_g16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:01:00 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,800,637 - 32,800,878)(32,673,396 - 32,673,575)
sequence
ATTTGCGGCCCTATACGACTCCTATATTCAGAAAATGGGCGGAATTCTTT
GACTTTCTCCCTTGACAATCCTCTGGCCATGTTTGTGTGACTCTTGCTTT
TTTCTTTGTTTCATCCTTTGGCCTGTATGTTTATCCTTTTTTTCTTGCAG
ACTTCACTACTGCAGACTTGTATAAAGTCCAAATTCAGAATAATTTATCT
GGGTTTGTTCTCTTAGAATACTTTGGCTATTCCAGTTTGTCTTTTAAACT
ATTTTATTCTTATGAAAGCCAGACTTTATAATTATAGACCGAGTTCCATG
AATTTGTTAATTATTATTGAACTAAATTTATGGATCCATTTATGGAAAAT
CAGCCACCTAAGATTATTGAATATTCTAATCATAAACACAGTGTCTCTTA
TTAATTTAAATCTATCTGAACTCGAATTGTTTGTATCCTCTTCAATGAAG
ATTCTTGCGAATAACATGTATCTAGTTTATGTGAAAGCATTTTGCTGTTT
TAAATGCTATTGTGCGATGGCATTCTTTATTTCTTATCCCTATCTCCCTG
TTATTATGTATAATTAGCATTGATATTTATAACGTGATTTTCATATTCCA
TGACGTCGATATTCTTATTTCCTTATGAATTTTCTAACGGATTCTTTCGG
ACTGCGAACTTGCCCTCGTTCCACCATTATCACTATCATCCCTTCCT
AATGTGATAGGCCTGGCGGACGCCTGGCTCCCAAATAGAGGTGAACTATA
GAAGATTCCCAAAAAAACTATGAAGTGATGTGTTTTATTGTGTGACAAAA
ACTACACGGACAATCTTCCCAACACTAACATACGTGTCTCTACATTTTTA
GCTAACTTTTTTTCTAAATAATGTTTATTACTTAAAAGCAATAAACTGTC
TTTTTTCACAAAATCAGGTAAGACCATTATTTGACTAGGATTATTATTGA
TAGCATAGCTTATTTATGTTTCAAGAATTGAGTTGCAAATGACTTAAAAA
TATGAGTGCATATAATATTTTATACCATATAATGTATAAAACATATAATA
ATACATTCTTTTTAGACGCCCCCCACTCGTAAATTGGTAGGTAAAGGATC
GGTGAATTTCTGTTATCTGATGACAAAGCATCTTTTTTTTTACGATTTAC
AAATTTCAACTTCTGTCCCCAAACACAAAACATGCTATAGAAAATATGGA
ATATAAAAGAAATTGACGAGAGAAAAAGAATCTCTCTCATATCCCTCACA
GCAGAAATTACTTTGGATATATTCCAACACTAAGGTGAACTTCAGAAAAG
GCGATCCTGTTTTACCGCAACCATGCTCCCGATTTCTCATGGAACCACTC
TTGGCTCATCTGGCACCCATCAAGGACAGGTGCAACCCCTGGTCGTTCTA
CCCTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no102_g16.b1 MSMg01no102_g16.b1 CHROMAT_FILE:
MSMg01no102_g16.b1 PHD_FILE: MSMg01no102_g16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:01:00 2005
         (242 letters)



>mm_chr1_32800437_32801078
          Length = 642

 Score =  445 bits (230), Expect = e-129
 Identities = 239/242 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   caatcctctggccatgtttgtgtgactcttgcttttttctttgtttcatcctttggcctg 60
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 442 caatcctctggccatgtttgtgtgacttttgcttttttctttgtttcatcctttggcctg 383

                                                                       
Query: 61  tatgtttatcctttttttcttgcagacttcactactgcagacttgtataaagtccaaatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tatgtttatcctttttttcttgcagacttcactactgcagacttgtataaagtccaaatt 323

                                                                       
Query: 121 cagaataatttatctgggtttgttctcttagaatactttggctattccagtttgtctttt 180
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 cagaataatgtatctgggtttgttctcttagaatactttggctattccagtttgtctttt 263

                                                                       
Query: 181 aaactattttattcttatgaaagccagactttataattatagaccgagttccatgaattt 240
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 aaactatttttttcttatgaaagccagactttataattatagaccgagttccatgaattt 203

             
Query: 241 gt 242
           ||
Sbjct: 202 gt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no102_g16.g1 MSMg01no102_g16.g1 CHROMAT_FILE:
MSMg01no102_g16.g1 PHD_FILE: MSMg01no102_g16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:01:00 2005
         (180 letters)



>mm_chr1_32673196_32673775
          Length = 580

 Score =  310 bits (160), Expect = 5e-89
 Identities = 175/180 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   acactaacatacgtgtctctacatttttagctaactttttttctaaataatgtttattac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acactaacatacgtgtctctacatttttagctaactttttttctaaataatgtttattac 260

                                                                       
Query: 61  ttaaaagcaataaactgtcttttttcacaaaatcaggtaagaccattatttgactaggat 120
           ||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||
Sbjct: 261 ttaaaagcaataaactgtcttttctcacaaaatcaggtaagaccattattcgattaggat 320

                                                                       
Query: 121 tattattgatagcatagcttatttatgtttcaagaattgagttgcaaatgacttaaaaat 180
           |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 321 tattattgatagtatagcttatttatgtttcaagaattgagtttcaaatgacttaaaaat 380


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 180
Length of database: 580
Length adjustment: 8
Effective length of query: 172
Effective length of database: 572
Effective search space:    98384
Effective search space used:    98384
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)