BAC Information

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BAC

Clone NameMSMg01-102I03
Chromosome1 (Build37)
Map Location 178,842,511 - 178,842,817
singlet/doubletsinglet
Overlap geneSdccag8
Upstream geneGm104, Pld5, B020018G12Rik, Cep170, LOC666235
Downstream geneAkt3, Zfp238, EG631449, LOC100040770, 1700016C15Rik, Adss, EG631584
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-102I03.T7 (MSMg01no102_i03.b1)MSMg01-102I03.TJ (MSMg01no102_i03.g1)
ACCAG317632AG317633
length724727
length of high quality
(start - end)
86 (92 - 177)310 (72 - 381)
definitionCHROMAT_FILE: MSMg01no102_i03.b1 PHD_FILE: MSMg01no102_i03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:01:07 2005CHROMAT_FILE: MSMg01no102_i03.g1 PHD_FILE: MSMg01no102_i03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:01:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNCCAAATAACANNANAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCGCGGAATTCCAGGGTATTCTCCGCTTAAGCTTGAGG
CCAGCCTGGACTACATGAAACCCTAACTCAAAAACACAGACTTGAGCCCT
GAACATTTATTACAAGAAAATTAGAAAGGAAAATAAAAAACCAGAAAAGA
GTTATAGAAATATTCCAATAAAATAAGGCGTCTGTTCAATCCAGATAATG
GGTCTAAATTACGTGGTTAATAAACTAGAGTTTCTGACTTAATTTTCTTG
GTTCCATCTACTGGATTATAATCCAACATATTTCTTTCCATGCATTGCTC
TGCTTTGCTTTTAGCCTCTCAGCCTACAATCTTTGTTCCCTCTCTTATTT
TCCTTCTGTCTCACATCTGCTAGAAGAATCCCCTTTAGAGTACATTTATT
TTATTTGTTTATCTATGATCTAACACTTCCTTAGTTAGTATCACAATTTT
ACTTGCCAATTTCAAAGTCTAGTAACCCTTCTATACCTAACTTTATTTCC
CTCATTATCCTATTGTATCCTCATATATATCCTTATGCTTTAATCGTTTC
CTTTTATGTTCTCGACTTTCTCACTTTTTTCTATTCCCTTCCACATGTCA
CCTCGTGCTTTTCTCCTTTCCACCTCCTTTTCACCTACCACTCCTCTGCC
TTTACTTGCTCTTTCCTCCCCCAG
AATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTGTTGTGACCTTATAAAATTAGTTTTAC
AGTCTTGTAACTTTAAAAATGAAGATGTACTATATTAGTAATTTTAAAAT
TACATAGATTAAGAATGAATAGAGAGTTTCATTAAGAAAATTCCTATTGT
ATATTTCTCACAAATTTCTAGGAGAGAAATACAAAAAGGTTATATTGCCT
TAAACCCAAAGAATAATTTTCCTGGAAAGCAAATGAAGCAGACAGAGCTT
ATTAAGCCTGCTCCCAAATATTATTGAGTTTAAAATTATTTTGCAGCTGG
GGATGCTAGAACACTCTGGCCCTCCCAGTACTTAGGAGGGTATGTATATG
TCAGGGTCCTGATTAGCCTACGCAATAGACTTACCTAGTCAGGACTATAG
AAATCCTGTCTCAAAAGTTCCTATGCGCCCTCGTCATCTTTAATAGTTGT
GGTACTTTTTTTTTTTTGCCTCAACGTTTTCTGCCCTTATTCCGAGCACT
GCTCTCTCCCTATACCCTATGTATATTCCTTTCCGACTATCCTTGTTTTG
TTTATACACTCCCCGCTTCACCCCTTTCATTACACGTCATCTCTCGCGCT
CTCGCCCCTCCACTTCACATACTTCCCCTTACTTATCCTACTACTTTATT
CCCTTTCACTTCTCCTTTTTACCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no102_i03.g1 MSMg01no102_i03.g1 CHROMAT_FILE:
MSMg01no102_i03.g1 PHD_FILE: MSMg01no102_i03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:01:07 2005
         (310 letters)



>mm_chr1_178842311_178843020
          Length = 710

 Score =  555 bits (287), Expect = e-162
 Identities = 302/307 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgttgtgaccttataaaattagttttacagtcttgtaactttaaaaatgaagatgtact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 ttgttgtgaccttataaaattagttttacagtcttgtaactttaaaaatgaagatgtact 448

                                                                       
Query: 61  atattagtaattttaaaattacatagattaagaatgaatagagagtttcattaagaaaat 120
           |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 447 atattagtaatttttaaattacatagattaagaacgaatagagagtttcattaagaaaat 388

                                                                       
Query: 121 tcctattgtatatttctcacaaatttctaggagagaaatacaaaaaggttatattgcctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 tcctattgtatatttctcacaaatttctaggagagaaatacaaaaaggttatattgcctt 328

                                                                       
Query: 181 aaacccaaagaataattttcctggaaagcaaatgaagcagacagagcttattaagcctgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 aaacccaaagaataattttcctggaaagcaaatgaagcagacagagcttattaagcctgc 268

                                                                       
Query: 241 tcccaaatattattgagtttaaaattattttgcagctggggatgctagaacactctggcc 300
           |||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |
Sbjct: 267 tcccaaatattattgaatttaaaattattttgcagctggagatgctagaacactctggtc 208

                  
Query: 301 ctcccag 307
           |||||||
Sbjct: 207 ctcccag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 710
Length adjustment: 9
Effective length of query: 301
Effective length of database: 701
Effective search space:   211001
Effective search space used:   211001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)