Query= MSMg01no102_j02.b1 MSMg01no102_j02.b1 CHROMAT_FILE:
MSMg01no102_j02.b1 PHD_FILE: MSMg01no102_j02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:01:12 2005
(248 letters)
>mm_chr1_120448068_120448716
Length = 649
Score = 453 bits (234), Expect = e-132
Identities = 243/246 (98%), Gaps = 1/246 (0%)
Strand = Plus / Minus
Query: 1 cgaaaagcgaacgccacgaagggggaacttcccctctgtccctgatgaa-cttatacatg 59
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 446 cgaaaagcgaacgccacgaagggggaacttcccctctgtccctgatgaagtttatacatg 387
Query: 60 cactgacaggtctactccacatccatgctcctagattctcaaagacaatagctttcccac 119
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 386 cactgacaggtctactccacatccgtgctcctagattctcaaagacaatagctttcccac 327
Query: 120 tggccagaaggccaagctcagctttgcagcctgttctgtaaacgttctgggccaggacct 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tggccagaaggccaagctcagctttgcagcctgttctgtaaacgttctgggccaggacct 267
Query: 180 ggcaggcaattcccatcccccatctcatactcctcccagtttctccattagtttttgttc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 ggcaggcaattcccatcccccatctcatactcctcccagtttctccattagtttttgttc 207
Query: 240 tcatga 245
||||||
Sbjct: 206 tcatga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 649
Length adjustment: 9
Effective length of query: 239
Effective length of database: 640
Effective search space: 152960
Effective search space used: 152960
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no102_j02.g1 MSMg01no102_j02.g1 CHROMAT_FILE:
MSMg01no102_j02.g1 PHD_FILE: MSMg01no102_j02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:01:12 2005
(109 letters)
>mm_chr1_120318972_120319480
Length = 509
Score = 195 bits (101), Expect = 5e-55
Identities = 107/109 (98%)
Strand = Plus / Plus
Query: 1 ggagcagttcttttatctttgctcttccatgttctctctccttccctccactttcctcgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggagcagttcttttatctttgctcttccatgttctctctccttccctccactttcctcgc 260
Query: 61 ctgcccttttttttcttacctcttctttttgatacaggctcttctgtgt 109
|||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct: 261 ctgcccttttttttcttatctcttctttttgatacagggtcttctgtgt 309
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 3
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 109
Length of database: 509
Length adjustment: 8
Effective length of query: 101
Effective length of database: 501
Effective search space: 50601
Effective search space used: 50601
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)
|
