BAC Information

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BAC

Clone NameMSMg01-102K09
Chromosome1 (Build37)
Map Location 46,181,998 - 46,182,340
singlet/doubletsinglet
Overlap geneDnahc7b
Upstream geneLOC383640, Col3a1, Col5a2, EG666799, LOC631429, LOC666814, EG666819, Wdr75, EG433297, LOC383644, Slc40a1, LOC670603, EG227054, LOC100042453, EG212225
Downstream geneLOC666855, Slc39a10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-102K09.T7 (MSMg01no102_k09.b1)MSMg01-102K09.TJ (MSMg01no102_k09.g1)
ACCAG317736AG317737
length743704
length of high quality
(start - end)
249 (88 - 336)343 (70 - 412)
definitionCHROMAT_FILE: MSMg01no102_k09.b1 PHD_FILE: MSMg01no102_k09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:01:18 2005CHROMAT_FILE: MSMg01no102_k09.g1 PHD_FILE: MSMg01no102_k09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:01:18 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NCAGTCAGCTNTGGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXCGCGGAATTCATTACATTCTTCACGAAATGGATGCATCT
AGAGGATATCATCCCGAGTGAGGTAACCCAATCACAAAAGAACACTCATG
GAATGCACTCATTGATAAGCAGATATTAGTCCCAAAACTTAGAATATCCA
AGATACAATTTGAAAAACACATGAAACTCAAGAAGAAGGAAGACCAAATT
GTGGATACTGGGCTCCTTCTTAGAATGGGGAACAAAATACTAATGGAAGG
AGTTACAGAGATAAAGTTTGGAGCTAAGATGGAAGGACAGAGCATCCAGA
GACTGTCTCACCCAGGGATCCATTCCATATACAACCACCAAACCCAGACA
CTATTGCATATGCCATAAAGGTTTTGATGACAGGACCCTGACATAGCTCT
CTCTTGTAAGTTTATGTCAATGCCTGGCAAATACAGAAGTGGATGCTCTC
AGTCATCTATTGGATAGAACACAGGGCTCCCTAGTGAAGGATCTAGAGAA
AGTACCCTAGGAGCTAAAGGTGTCTGCAATCCTATTGGATGAACAACGAT
ACTAATTAACCCTAACGGTCTATAGCTGTGTTTCTAGCTGCATACGTATT
ACATTATGCCCAATTCGTTCCTCCCTGTCGCAACATTCCCTTGGCTTACC
GCACATCCTATATCCTCAACAACGTGTCATGTTCGGCTCCCTA
TGTAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCTATGATCACTACCCCTAGATGTCTCTAGG
TGATTTGAGGTTCAGCGAGATTTTGAAATAAATTATAAGAATAGTTTGAA
TAAAATAATTACACGGTGTCTCAGTGACCTTTGGCAGTAGATGCAGAAGC
AGATTCATATTTCTGTTCATTAATATATTTGATAGGAATGGAAAATAGAT
TAAAATAAAACTTTTAAAACTTTTCTTTCCCTTGGAAGGCAAACTGGTAA
GGGCTGAGGCACCATGAGTCTAAACTCACAACTGTCTCATGATCTAATAT
GATATTCTTTGAACACCTTGAGTTATCACATGAAATATCATTTTTCTTAA
CTCTCAATGGGCACTAATTAAATTTAATATTAGAAACTTTCTAAGGTGAT
TCTCAGTCTGAAAATCTAATTATGTCTACAAAAATAGCTCTATTTTAGAA
ATTAGACAAGCTGCCACAAATGTACAAAACAGTCTAAGATGAGTATTATT
GACCTTCACTGGATAACCCATATCTCCACCTTATACACAGCCCCATTGCG
CGCTATGAAGTTCTCTACACTGTATTGTACAAGAGACCATTCCTAGTGTC
TTTCCGATCCCATTATTGAAGTAACTGATCCGCGTGCTAATATCCATTAC
TGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no102_k09.g1 MSMg01no102_k09.g1 CHROMAT_FILE:
MSMg01no102_k09.g1 PHD_FILE: MSMg01no102_k09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:01:18 2005
         (343 letters)



>mm_chr1_46181798_46182540
          Length = 743

 Score =  656 bits (339), Expect = 0.0
 Identities = 342/343 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctatgatcactacccctagatgtctctaggtgatttgaggttcagcgagattttgaaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctatgatcactacccctagatgtctctaggtgatttgaggttcagcgagattttgaaat 260

                                                                       
Query: 61  aaattataagaatagtttgaataaaataattacacggtgtctcagtgacctttggcagta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaattataagaatagtttgaataaaataattacacggtgtctcagtgacctttggcagta 320

                                                                       
Query: 121 gatgcagaagcagattcatatttctgttcattaatatatttgataggaatggaaaataga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatgcagaagcagattcatatttctgttcattaatatatttgataggaatggaaaataga 380

                                                                       
Query: 181 ttaaaataaaacttttaaaacttttctttcccttggaaggcaaactggtaagggctgagg 240
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 381 ttaaaataaaacttttaaaacttttctttcccttggaaggcaatctggtaagggctgagg 440

                                                                       
Query: 241 caccatgagtctaaactcacaactgtctcatgatctaatatgatattctttgaacacctt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caccatgagtctaaactcacaactgtctcatgatctaatatgatattctttgaacacctt 500

                                                      
Query: 301 gagttatcacatgaaatatcatttttcttaactctcaatgggc 343
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gagttatcacatgaaatatcatttttcttaactctcaatgggc 543


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 743
Length adjustment: 9
Effective length of query: 334
Effective length of database: 734
Effective search space:   245156
Effective search space used:   245156
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)