BAC Information

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BAC

Clone NameMSMg01-102M22
Chromosome1 (Build37)
Map Location 108,694,754 - 108,695,055
singlet/doubletsinglet
Overlap genenone
Upstream geneTnfrsf11a, EG635504, Zcchc2, EG435634, Phlpp, LOC626075, Bcl2, LOC100042085, Fvt1, Vps4b
Downstream geneSerpinb5, LOC671141, Serpinb12, Serpinb13, LOC666394, Serpinb3a, Serpinb3d, LOC100041276, Serpinb3b, EG666401, Serpinb3c, LOC666414, Serpinb11, Serpinb7, Serpinb2, Serpinb10, Serpinb8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-102M22.T7 (MSMg01no102_m22.b1)MSMg01-102M22.TJ (MSMg01no102_m22.g1)
ACCAG317852AG317853
length705704
length of high quality
(start - end)
302 (66 - 367)410 (67 - 476)
definitionCHROMAT_FILE: MSMg01no102_m22.b1 PHD_FILE: MSMg01no102_m22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:01:30 2005CHROMAT_FILE: MSMg01no102_m22.g1 PHD_FILE: MSMg01no102_m22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:01:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAATGCGCGGAATTCTTT
ATGTGTTCCAGGTTACAAAATACTTGTGTATATATTTTATCTTACTGAAT
TCTATGAGAAATGTGTCTGATTTTTATAACTGAAGCTAATTGGGTGATCA
AGAAAGCCCATTGCACAGCTGGGTGGTAAACTTAGGTCACTTATCTCCAA
GGGCAATCTCATCTGAGAACTGAGGCAAACAACAAGAGGCTGAATGAACC
CTGACTCTGGAGTGGAGGCTCAGTTCCGATCACATGAACAAGGATGCCCT
AGAGAAGTGTCATCTGAACAGAATCTCAAAGTCTTAAATTGATTTCCACA
GACCAGGACATTTCAGACAGCAGCCAAAGCAAGAATAAATGCACAAAGGA
AAGCCATCCAACGTGTTTATGGGAGGCTGGCATGCAGGAAGCAAAGATAC
TTTAGAATAAGAGTGGCAGGAAATGAAGTTAGGAATATATCGGCAGGCAC
TGATGGATGCTGAGTGCTTCATGCATTATGCTTCTCTAGAAAGCATACAG
GGTTGCAGAAGCCCTGCATTGTTGGTCTTTTTAGATTTTATTTCTGGCGA
AGTTGTGATTGGTGGAATGTTGACTTTATGAAGATGGATATGGGTATTGT
AGAATGTACCAAGACAAAGCCGGCAGCAACCACGAATTACGAAGCATCTT
GATCC
ATGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTTCCTTTCTTATATGAATCCCTTTCATCTCCTTT
TGTTGTCTTATTGCTCTCGATAGAACTTCAAGTTCTATATTGAATAGAGA
ATGAGCAGCCTTGTCTTGTCCCTGATTTTAGTGGGATTGCTTCAAGTTTC
TCTCCATTTAATTTGATATTGACTGTTGACTACATGTAGTTTTTATTATG
TTTAGGTATGTGCCTTAAATTCCTGATCTCTTTAAGACGTTTACCATGAA
GGAGGGGTGGGTTTTGTTTAAGGCTTTTTCAGCACCTAATGAAATAATCA
TGAGCTATTTGTCTTTCACTTTGCTTATATAGTGGATTATGTTAATAAAT
TTTCATATATTGAACCATTTCTGTACTCCCTAGGGTGAAGCCTACTTGAC
CATAGTAAATGATGTCTGCTGAAGTGCCTGTGGACTGGAAGTTTGGTAAT
CTTAAAAACAAACAAACAAACAACATCAACAACTAAAACTAAAACATTAT
TTGAAAAAATAAATAAAGAATTGAAAATTCTAAAAATTAACCCGTTTATT
CTTTTCTGAATTGTTCATTTACTTGCTCATTTTGTTTTCCATTTATTTAA
TCTCTTATTTGACGGCTTTTGTTTTTTGTTTCCCAACACAGGGTCTCTCC
TGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no102_m22.b1 MSMg01no102_m22.b1 CHROMAT_FILE:
MSMg01no102_m22.b1 PHD_FILE: MSMg01no102_m22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:01:30 2005
         (302 letters)



>mm_chr1_108694554_108695255
          Length = 702

 Score =  569 bits (294), Expect = e-166
 Identities = 300/302 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaaatacttgtgtatatattttatcttactgaattctatgagaaatgtgtctgattttt 60
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaaatacttgtgtacatattttatcttactgaattctatgagaaatgtgtctgattttt 260

                                                                       
Query: 61  ataactgaagctaattgggtgatcaagaaagcccattgcacagctgggtggtaaacttag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ataactgaagctaattgggtgatcaagaaagcccattgcacagctgggtggtaaacttag 320

                                                                       
Query: 121 gtcacttatctccaagggcaatctcatctgagaactgaggcaaacaacaagaggctgaat 180
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 321 gtcacttatctccaagggcaatctcatctgagaactgaggcaaacaaccagaggctgaat 380

                                                                       
Query: 181 gaaccctgactctggagtggaggctcagttccgatcacatgaacaaggatgccctagaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaaccctgactctggagtggaggctcagttccgatcacatgaacaaggatgccctagaga 440

                                                                       
Query: 241 agtgtcatctgaacagaatctcaaagtcttaaattgatttccacagaccaggacatttca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtgtcatctgaacagaatctcaaagtcttaaattgatttccacagaccaggacatttca 500

             
Query: 301 ga 302
           ||
Sbjct: 501 ga 502


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 302
Length of database: 702
Length adjustment: 9
Effective length of query: 293
Effective length of database: 693
Effective search space:   203049
Effective search space used:   203049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)