BAC Information

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BAC

Clone NameMSMg01-102N09
Chromosome1 (Build37)
Map Location 101,467,025 - 101,467,275
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666182
Downstream geneC230078M14Rik, LOC633295, EG666200
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-102N09.T7 (MSMg01no102_n09.b1)MSMg01-102N09.TJ (MSMg01no102_n09.g1)
ACCAG317873AG317874
length693779
length of high quality
(start - end)
243 (74 - 316)370 (125 - 494)
definitionCHROMAT_FILE: MSMg01no102_n09.b1 PHD_FILE: MSMg01no102_n09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:01:33 2005CHROMAT_FILE: MSMg01no102_n09.g1 PHD_FILE: MSMg01no102_n09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:01:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATGCGCGGA
ATTCTTTAACTTTACCTTTATTGTTTGATGTTTGAATACAGTGGTAAAGA
AAGTATGTGATTTGAGAAAATTAAAGGGTCTTAATTCTTATAAAACACTT
ACTTTGTAGAACAAATGTAGCACTTAATTAATGCTAGTTGTTGCCCTTTG
TAGACTATTCATTTTATGTTTTCTAGTTTATAATTCTTTCTTTAAAAATA
TTTCTTAAATTTATTTTGAGGGTTGGGTGGATATGTATCTGCTATGTGAG
AGTGTGCCTGTGTGTGTGTTCTGTGTATAAATCAGAGACCAACTTTCAAG
AGTTGATTCTCTCCTTTCACTATATGAATCCCAGGGGATGGAACATTGTT
CCTCTGCATTGTTACCAATCACTTTTACTTGCTGAGGGACTCTAACCATT
CATTCTCTGCATTGATTCTGTCTGCATAATCCTTTCCCTCCTTTCCCATG
CTCATAGAGCAAGATACTCCTTTCTGTTTACACTTTCTAGACTTCTCTGA
CTCATTTTTTACCTCTAATCTTATAATTTGACATACTCTATTATACTCAG
TTTATACGTTTATGCGCTTGTTCCTTTTGACTCTGTTGGTCCCCTGTGCC
CTTCTTATTCGCGCTATCTTGATCCCTGTTCCTCTATTTTTTT
NNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCNCCCCCCAAAAACC
ACAAATCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTTCTGCGAAATTCTCACCTGAGGAATACCGAATGGC
AGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGC
AAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAG
ATCAAAAATTCAGGTGACAACAGATGCTGTCGTGGATGTGGAGAAAGAGG
AACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGAA
AATCAGTCTGGCAGTTCCTCTTAATATTGGACATAGCACTACTGGAGGAT
CCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAATTGGTAA
GACGGACACAAGCTCCACTATGTTCATAGCAGCCTTATTTTATAATAGCC
AGAAGCTGTAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACCGAA
CATGCGGTACATCTATATAATGGAGTACTACTCAGCATATTAAAAAGAAT
GATTTTATGAAATTCCTACCCAAATGGACGGACCTGTTAGGCATCTTCCT
GAGTGAGGTTATACTTTTCCAAAGTGAATCACACAATATTGTATTTCACT
GGATAATTGGAATTTAAGCCCCGTCCGTAGTATACCCCAAATAAAGGAAA
TTATTGGCTAATCACATGGAACCTCAAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no102_n09.b1 MSMg01no102_n09.b1 CHROMAT_FILE:
MSMg01no102_n09.b1 PHD_FILE: MSMg01no102_n09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:01:33 2005
         (243 letters)



>mm_chr1_101466855_101467497
          Length = 643

 Score =  431 bits (223), Expect = e-125
 Identities = 239/251 (95%), Gaps = 11/251 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttgatgtttgaatacagtggtaaagaaagtatgtgatttgagaaaattaaagggtctta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tttgatgtttgaatacagtggtaaagaaagtatgtgatttgagaaaattaaagggtctta 362

                                                                       
Query: 61  attcttataaaacacttactttgtagaacaaatgtagcacttaattaatgctagttgttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 attcttataaaacacttactttgtagaacaaatgtagcacttaattaatgctagttgttg 302

                                                                       
Query: 121 ccctttgtagactattcattttatgttttctagtttataattctttctttaaaaatattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccctttgtagactattcattttatgttttctagtttataattctttctttaaaaatattt 242

                                                                       
Query: 181 cttaaatttattttgagggttgggtggatatgtatctgcta-----------tgtgagag 229
           ||||||||||||||||||||||||||||| |||||||||||           ||||||||
Sbjct: 241 cttaaatttattttgagggttgggtggatttgtatctgctaaggtgtgggtatgtgagag 182

                      
Query: 230 tgtgcctgtgt 240
           |||||||||||
Sbjct: 181 tgtgcctgtgt 171


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)