Query= MSMg01no103_f17.b1 MSMg01no103_f17.b1 CHROMAT_FILE:
MSMg01no103_f17.b1 PHD_FILE: MSMg01no103_f17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:02:15 2005
(291 letters)
>mm_chr1_30065719_30066407
Length = 689
Score = 520 bits (269), Expect = e-152
Identities = 285/291 (97%), Gaps = 2/291 (0%)
Strand = Plus / Minus
Query: 1 ctcctccagctctgcttaactctgtcttcctaggattagtaactgtttcagacaatttga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 ctcctccagctctgcttaactctgtcttcctaggattagtaactgtttcagacaatttga 430
Query: 61 gaacctctatccctaatttattataatttgtccaattatgtatgacaaccatttaaacaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 gaacctctatccctaatttattataatttgtccaattatgtatgacaaccatttaaacaa 370
Query: 121 tatgttcacactgtttcagtcagtattgttgaaaccttgtgaaagcttaagcttccttta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 tatgttcacactgtttcagtcagtattgttgaaaccttgtgaaagcttaagcttccttta 310
Query: 181 acaaagaactaatttttttttttcttgaaaattgagcaaattcattagcactgtgtttct 240
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 acaaagaactaa--tttttttttcttgaaaattgagcaaattcattagcactgtgtttct 252
Query: 241 tcacaggattttgttaattagtcattaatgacttgttctcttaaaaacaaa 291
|||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct: 251 tcacaggagcatgataattagtcattaatgacttgttctcttaaaaacaaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 689
Length adjustment: 9
Effective length of query: 282
Effective length of database: 680
Effective search space: 191760
Effective search space used: 191760
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no103_f17.g1 MSMg01no103_f17.g1 CHROMAT_FILE:
MSMg01no103_f17.g1 PHD_FILE: MSMg01no103_f17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:02:15 2005
(617 letters)
>mm_chr1_29953458_29954474
Length = 1017
Score = 1139 bits (589), Expect = 0.0
Identities = 610/617 (98%)
Strand = Plus / Plus
Query: 1 tctatagggttatccactgacttcccattaatcactatctacttaacacttaatcatttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctatagggttatccactgacttcccattaatcactatctacttaacacttaatcatttt 260
Query: 61 tacagggacaaggacaataatctcttactttctgcttactgcttttgcaagtttataagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tacagggacaaggacaataatctcttactttctgcttactgcttttgcaagtttataagc 320
Query: 121 ctctgaattctaaactaagccaatcgttttctgtcttttgacatattagtttgatatttc 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 321 ctctgaattctaaactaagccaatcgttttctgtcttttgacatattagtttgacatttc 380
Query: 181 aaatgttttataggatattatttaaagatatagataaacatcattttgtatcaataaatg 240
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct: 381 aaatgttttataggatattatttaacgatatagacaaacatcattttgtatcaataaatg 440
Query: 241 tattaataagaaaattgtctatcaagtgatagcagttttaaaaatatgaaaagtcatgta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tattaataagaaaattgtctatcaagtgatagcagttttaaaaatatgaaaagtcatgta 500
Query: 301 ggttggggaaacagatcacatagagctaatccatttttaattcaactataaacttcttaa 360
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 501 ggttggggaaacagatcacatagagctaatccatttttaattcaattataaacttcttaa 560
Query: 361 tgaatgttatattatctctcataaaaatatctaccctttgcattcataattaaaattaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgaatgttatattatctctcataaaaatatctaccctttgcattcataattaaaattaaa 620
Query: 421 ttaaatttcctaatatggttcagacttaaaaatcaccttaatttaaaactactcccctat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttaaatttcctaatatggttcagacttaaaaatcaccttaatttaaaactactcccctat 680
Query: 481 ttccatagaaacagcagaataaaattttctagtcagttatatttagagtatttctgcttc 540
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttccatagaaacagtagaataaaattttctagtcagttatatttagagtatttctgcttc 740
Query: 541 atttccccttattctattgggtagaattataccagagtcgtgagttatatatcacctgct 600
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 741 atttccccttattctattgggtagaattataccagagtcgtgagttatatatcacctgat 800
Query: 601 atttcaagatgtcttta 617
||||||||||| |||||
Sbjct: 801 atttcaagatgacttta 817
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1017
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1007
Effective search space: 611249
Effective search space used: 611249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
