BAC Information

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BAC

Clone NameMSMg01-103H04
Chromosome1 (Build37)
Map Location 154,267,675 - 154,267,920
singlet/doubletsinglet
Overlap geneGlt25d2
Upstream gene1200016B10Rik, 1190005F20Rik, Rnf2, Niban, Edem3, 1700025G04Rik, LOC668076, 5730449L18Rik
Downstream geneRgl1, EG639787, Apobec4, Arpc5, Ncf2, Smg7, EG668097, Nmnat2, Lamc2, Lamc1, EG667795, EG626058
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-103H04.T7 (MSMg01no103_h04.b1)MSMg01-103H04.TJ (MSMg01no103_h04.g1)
ACCAG318312AG318313
length743715
length of high quality
(start - end)
150 (95 - 244)246 (74 - 319)
definitionCHROMAT_FILE: MSMg01no103_h04.b1 PHD_FILE: MSMg01no103_h04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:02:22 2005CHROMAT_FILE: MSMg01no103_h04.g1 PHD_FILE: MSMg01no103_h04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:02:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTGCGCTCGTCCCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTTCC
CAAATCGCGCGGATTCAGAGGGCATTTGCAGATTTCAGATAAGTGGTACA
GGGGAAGCCAGATGACCCATTTGAAAATGAGAGGGGAATCCCAAACACTT
AGCTCAACATAGACCAAAGGCTTACAGACATACCTGTAAATCCCAGCACT
CTGGAGGCCGAGGCAGGAGAATTATAAGTTCAAGGCTAGCCTGGGTTATA
GTCATTTCTAGGTACGTGTGATTTTACTGTCACATCTACAGGCAAAATGG
CCCCTGCGGTCAGACCAGGAGGAATCTAGATGTCTCACTCTTCAGGACAT
ATACACCCTTATCTATTATCTGTTTGTTTGTTTTCTGCACACCTGAACAT
GGCTTCAAACCCATTCCCCTCTATTACTTGACAACACACCATAGCTTTGA
CGTAGGTCCGAGACCCGCGGATCACGTCTCTTTCCGTGGTCCGAACTTCT
TAGGTCCCATCCCTAATGGTACCCATTCCTACTTGCGAACTTGGCTCCTT
ATCCTTCTGATTCCTGACCGATTATTAGCACACGACTTACTTCTCCCCTC
TGGTCAACTTAGATATCGCGAACCTCTGATCCCTCCGTCACTTAAACGTG
TTAGTACCCCTCCAGCACAATCCAGCTCTTTCCGGCCGTTGTTACGTTAC
ATTATCGTATCACCCACTGGTTGGACCTTATCAGGGTTCCCGA
CATTACAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTCTGCTTGCTACTGGCAGAGAAACC
TTTCTCCTTTCTCTGTTTACTCTGATCCCTGCTGTCTGAAGACTCTTCCG
CCCTATTAATATCTGGCTTTCGGAGATTGCATATTCATGTCTATAGAGGG
TGTCTGTGTTAAACTTGGCTCTAAAGTATCACACCTTTTTAGTTGTATAT
TTTGTGTAGTGTTCCTGTGTGTATCTTATTAAATGTATAGATTTTCAAGG
TAACACGAACGATGTGTGTAGTCTGATATGTTTGTAGTGTTGCTGATTGG
TAGCATACCGGAAAAGCGATCGACCTTGTCTCTTGAAAATACTTCCATCA
GACATGAAGTATCTGACCGACTGGCCCTGTTCTCATAAATGCCTACTTAA
ATCAAAACTTCTACCCGAGACATTCTATCTACCGGAATGTATCCGACTGA
ATATCGTCACAATTAGATCAAGGTACACATCCCCTTTTTCTATGGCACAT
TGCGTGATAGCCTTTTTTCCTTGTCAAATAGACCCCAAACACGCTCCACT
TACTCCCGTTAGTTCGAAACCATCCTTTGTTTTTTACCTCCACTCTTACT
CCCAGTCTCCTTCCGCCTTGACCCATGTTTCCCTCATCCCTCCTTTTTGC
CCCTTATTCCGTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no103_h04.g1 MSMg01no103_h04.g1 CHROMAT_FILE:
MSMg01no103_h04.g1 PHD_FILE: MSMg01no103_h04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:02:22 2005
         (246 letters)



>mm_chr1_154267475_154268120
          Length = 646

 Score =  445 bits (230), Expect = e-129
 Identities = 242/246 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttctgcttgctactggcagagaaacctttctcctttctctgtttactctgatccctgct 60
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 201 tttctgcttgctactggcagagaaacctttctcccttctctgtttactctgatccctgct 260

                                                                       
Query: 61  gtctgaagactcttccgccctattaatatctggctttcggagattgcatattcatgtcta 120
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtctgaagactcttccaccctattaatatctggctttcggagattgcatattcatgtcta 320

                                                                       
Query: 121 tagagggtgtctgtgttaaacttggctctaaagtatcacacctttttagttgtatatttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagagggtgtctgtgttaaacttggctctaaagtatcacacctttttagttgtatatttt 380

                                                                       
Query: 181 gtgtagtgttcctgtgtgtatcttattaaatgtatagattttcaaggtaacacgaacgat 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct: 381 gtgtagtgttcctgtgtgtatcttattaaatgtatagattttcaaggtaacatgaaggat 440

                 
Query: 241 gtgtgt 246
           ||||||
Sbjct: 441 gtgtgt 446


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)