BAC Information

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BAC

Clone NameMSMg01-103I16
Chromosome1 (Build37)
Map Location 40,348,806 - 40,348,933
singlet/doubletsinglet
Overlap geneIl1r1
Upstream geneNpas2, LOC100041999, Rpl31, Tbc1d8, D1Bwg0212e, Rnf149, EG329126, Creg2, 4933400N17Rik, LOC100042065, Map4k4, Il1r2
Downstream geneIl1rl2, Il1rl1, Il18r1, Il18rap, Slc9a4, Slc9a2, Mfsd9, Tmem182, Ppia-ps1_352.1, LOC100041441
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-103I16.T7 (MSMg01no103_i16.b1)MSMg01-103I16.TJ (MSMg01no103_i16.g1)
ACCAG318382AG318383
length728707
length of high quality
(start - end)
---125 (74 - 198)
definitionCHROMAT_FILE: MSMg01no103_i16.b1 PHD_FILE: MSMg01no103_i16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:02:30 2005CHROMAT_FILE: MSMg01no103_i16.g1 PHD_FILE: MSMg01no103_i16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:02:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTCACAAATTTGTTGGCGTTAATACGACTCACTATCCCAAAAAGGAGCG
CGCGGAATTCATTATTTCCATTCAAGTAAAATAGACACGAATTTTATTTA
ATACGCTGTGCCGTTCATCCAGTACCAACACATTGATTTGAACACCAACA
GGTGAATTACTAATAAACTGGAAAACAAAGAAATCACTCACAAACCAAAT
AAACACCAAATTACTGACTATCACATATATTTCTAATACAAACGTGAACT
AAAGTATTCTCAGAAATCTAGATAAAAGATCCTGTTACAGAGGAAGGCAT
TGTGTAACCAATGCCAAATTGTTTTATATAAGTGCTCCGAACTTTCCTTC
CCTGCTCAATTTTCTCTGCCCCCCCCCCCCCCCTTACAAATATATGACAA
CTACTTACCATTGTATTAACAACATAAACAATACTAGATCCCCACATACC
TCCTTGACTACCATTCCCTATCTTAACACTTTTCTTACTCTACATCCCGT
ACCACCTATTACCCATAACCTTTGTATATCCCACTTCGCTATTTTCCCTC
AATTTCCTTTTCCTTTTATACTCACCGCTTCTTTTTATGTTTATAATCGC
CCCATATTTACTCTATTTCATCCCCTTTCCCCCTTCCTACCTTTTCATTT
TATTACCTCCTCCTTTATATCTTTTTCTCTTTTCTAACTCATCCCCATTC
TCTATATTACATATTACCCTACTTTTAC
TCCCACGATGATAGCGGTAGGCCTGGAGAGCGCCTTTCCAACAAATTTAG
GNGAACTATAGATTTCAACAGGAATTCTTGGAAGTTTCTTGAGAGACAGA
TCTCCAGAGGATGGATTCTTAGAGCTTTAACATCCTCTCGGTGATTTGGA
AAGTCATTTTCACTGGAATGACGGCTGGATAATATTTTTACTCCCTAGAA
GAATGCTTAGAAGAACTAACCCCTTTTGGTTTTGTTTCTTAACAGATGTA
CTTAAAAATGAAAAAGTAGCCAGGTGTTGGTGGCACATGCCTTTAATCTC
ATAGTTTAGGAGGCTGATTTTTGTGGATCTCTATAAGCTCAAGGCCAGAC
TGGTCTACATAGCTAGCTCTCACACCGCCAAGACTATACACAGAAACCGT
GTCTTGACCCCAATTATCAAAATACTCAAATACCTTTCAAAAAAGCATCT
CTGGCTACTTAAGATTCTCTCGTCACTGGCGCCACCAGTCTTATTTTAGA
CAGCCGCCATGGTTCCCTTTTTCTTTTTCTTGGCGTTCATCGCGTCTTTG
CGGCTCAATGATCATTATCCCCTCCCACCTAATTTCAGTATGCGTCGCCC
ACACTTACTCAGCTGATTATCACTCACCGCGCTCCATTTCGCCCCATTCA
TCTCTTATTCCCCATACACTTCTTTTACGCCTCCACCCTTCTGCCTTTCT
TTATCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no103_i16.g1 MSMg01no103_i16.g1 CHROMAT_FILE:
MSMg01no103_i16.g1 PHD_FILE: MSMg01no103_i16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:02:30 2005
         (125 letters)



>mm_chr1_40348606_40349133
          Length = 528

 Score =  217 bits (112), Expect = 2e-61
 Identities = 124/128 (96%), Gaps = 3/128 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   attcttgga-agtttcttgagag-acagatctccagaggatggattcttagagcttt-aa 57
           ||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||| ||
Sbjct: 201 attcttggacagtttctcgagagtacagatctccagaggatggattcttagagcttttaa 260

                                                                       
Query: 58  catcctctcggtgatttggaaagtcattttcactggaatgacggctggataatattttta 117
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catcctctcggtgatttggaaagtcattttcactggaatgacggctggataatattttta 320

                   
Query: 118 ctccctag 125
           ||||||||
Sbjct: 321 ctccctag 328


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 125
Length of database: 528
Length adjustment: 8
Effective length of query: 117
Effective length of database: 520
Effective search space:    60840
Effective search space used:    60840
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)