BAC Information

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BAC

Clone NameMSMg01-103I19
Chromosome1 (Build37)
Map Location 76,067,119 - 76,067,362
singlet/doubletsinglet
Overlap genenone
Upstream geneNhej1, Slc23a3, 1810031K17Rik, BC038286, Zfand2b, Abcb6, Atg9a, D1Ertd161e, Stk16, Tuba4a, A630095N17Rik, Dnajb10, Ptprn, Resp18, Dnpep, Des, Speg, Gmppa, Accn4, D1Bwg1363e, A230078I05Rik, AW822216, Inha, Stk11ip, Slc4a3, LOC100039069, LOC383531
Downstream geneLOC100039137, Tfdp1-ps
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-103I19.T7 (MSMg01no103_i19.b1)MSMg01-103I19.TJ (MSMg01no103_i19.g1)
ACCAG318388AG318389
length724730
length of high quality
(start - end)
310 (50 - 359)244 (69 - 312)
definitionCHROMAT_FILE: MSMg01no103_i19.b1 PHD_FILE: MSMg01no103_i19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:02:30 2005CHROMAT_FILE: MSMg01no103_i19.g1 PHD_FILE: MSMg01no103_i19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:02:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAATCCGCGGAATC
CACTTATTATTCATTTCAATTGGGCTGTGAATGTAGCTCAATTGGGAGAC
TGCTTGCCTAGCATTCACAAAGCCCTGGTTTCACTCTCCAGCAACATGTA
AACAGGGCATGATGGTGCACACCTGTAATGCTAGTGCCTGGGACATGGAG
ACGGGAGGACCAGAAGTTCAAGAGCATCTTCAAGAGCATCTTCAGTCATA
TCACAGTTAGAGACTAGCCTAGAATAACAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGATATTTAGCTCTCTCCCAGCAATGGAAAGAGA
AAGGCATACTGTTAAACCTATCCACCCCTGAAGGCACGAATCCAGACAGA
GATCACAGGTAGATTCAGAGGCTCTCCTGTCCCTTGGTGACCTGAGTACC
TTTTCTCACTGGCCACTGTCTTCTTTTCCTGCTCATGAGCTGTTTCCAGT
GAGAGAGGTGCTAATTCCTCTTGGACAACTGCGAACTGCCTCCCTGTTGC
TCTCGTATAGGAGATAGCACCTTCAGCCATCATGGCTACAAGATATGTCT
GAAATGCCCTGTCTTCCCTTACCTGCAAGTGGTACTGTGTAATATCCTCA
AGCAGTTGCTAATGCATAATATTATCAGCAGTTCATGCTTATTCCCATTG
CATCTCCCCAAATTTGCCTTACTG
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTAGCAGGAGGTAATGGCAGCCATCATGGGAA
CTTGGAAGGATGTCCAGCTGGCGTCTTACAGGTAGAAAGCAGAGTGCTGC
CAAACATCTATAGTGCACAGAACATCCCCATAGCAAATCACGATCTTGTC
CAAATATTGGGGTGCTGAAGAAGGCTTGAGAAGCCTTGCCCCCCAAGAAT
GGCAGGAATGAATGACTGTTTCTGTCTTCCTTTTCTCCTTGTTTTTCTGA
ATCCTGCCTCCCCTCTTTGCTAGAGGGAGTAGAAAGAGGACTGGAAGTCT
CTCTTTACAATGTTCCTTAGGAACTAATTGGCAGAGGGAACAAGGAGTTT
CAACCTCCCACGTCCGTCAGCTCACTACCTGCTGCAGCATCAATTATGTC
TCGGCCCTCGTTACGCCCGATTGTTGGAGAGCTGCCGTGTGGTATTGCCG
GTACTGTGGTGCTGCATCCTTTACACACCTTCCACGACGCAGGCTGACAT
GAGTGGTGAGATACATTAGGTTATGTCGTCACTCTGCGTCGTTAGCTGTC
GTATACCCCATTGCGTCTTGTCACCTAAATGAACTCCGTGCTCATTCTTT
GCCTTTGACATTTCCTTCCAACCTTTAGAACGCCTGAGTCCCCTTGTTCC
ACCTTCCTTTTAATTACACCCCAATATTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no103_i19.g1 MSMg01no103_i19.g1 CHROMAT_FILE:
MSMg01no103_i19.g1 PHD_FILE: MSMg01no103_i19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:02:30 2005
         (244 letters)



>mm_chr1_76066919_76067562
          Length = 644

 Score =  449 bits (232), Expect = e-131
 Identities = 241/244 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttagcaggaggtaatggcagccatcatgggaacttggaaggatgtccagctggcgtctta 60
           |||||||||| |||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct: 201 ttagcaggagataatggcagccatcatgggaacttggaaggatgttcagctggcatctta 260

                                                                       
Query: 61  caggtagaaagcagagtgctgccaaacatctatagtgcacagaacatccccatagcaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caggtagaaagcagagtgctgccaaacatctatagtgcacagaacatccccatagcaaat 320

                                                                       
Query: 121 cacgatcttgtccaaatattggggtgctgaagaaggcttgagaagccttgccccccaaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cacgatcttgtccaaatattggggtgctgaagaaggcttgagaagccttgccccccaaga 380

                                                                       
Query: 181 atggcaggaatgaatgactgtttctgtcttccttttctccttgtttttctgaatcctgcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atggcaggaatgaatgactgtttctgtcttccttttctccttgtttttctgaatcctgcc 440

               
Query: 241 tccc 244
           ||||
Sbjct: 441 tccc 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)