Query= MSMg01no103_m01.b1 MSMg01no103_m01.b1 CHROMAT_FILE:
MSMg01no103_m01.b1 PHD_FILE: MSMg01no103_m01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:02:46 2005
(659 letters)
>mm_chr1_165422629_165423687
Length = 1059
Score = 1230 bits (636), Expect = 0.0
Identities = 651/656 (99%), Gaps = 2/656 (0%)
Strand = Plus / Plus
Query: 5 ggaattccatatag-aatctttctgggaaatttacatctcaaaattcaatatgctcagtg 63
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ggaattccatatagaaat-tttctgggaaatttacatctcaaaattcaatatgctcagtg 263
Query: 64 atataaggaagatgatcatgtcatgtgctacatcctaagtactttgctaggcaggagaaa 123
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 264 atataaggaagatgatcatgtcatgtgctacatcctaaatactttgctaggcaggaaaaa 323
Query: 124 tataactggtttcaaagtagtttcacaactcaagttacttagaggaataaaattgtctat 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tataactggtttcaaagtagtttcacaactcaagttacttagaggaataaaattgtctat 383
Query: 184 aaaacattatcatatacaacatccattattagttaaatgaagagtagttgatatactcat 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aaaacattatcatatacaacatccattattagttaaatgaagagtagttgatatactcat 443
Query: 244 aaataaattgatcatcaaaaatgatatttttccattggactgtggaaattagaaacattt 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aaataaattgatcatcaaaaatgatatttttccattggactgtggaaattagaaacattt 503
Query: 304 ggaactgtgcgacatcataaggcacggatgggcttggactgtgcagaaagagaagcggca 363
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 504 ggaactgtgcgacatcataaggcatggatgggcttggactgtgcagaaagagaagcggca 563
Query: 364 ggctttcagagagtagaaatggtggaaagagcatacataggcatgcgcagcttctaaagc 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ggctttcagagagtagaaatggtggaaagagcatacataggcatgcgcagcttctaaagc 623
Query: 424 ctataacatctctcatatcccactgtccttggatcccgtttgtctccttacaaaccatct 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ctataacatctctcatatcccactgtccttggatcccgtttgtctccttacaaaccatct 683
Query: 484 accccaatgcaactttcttgatggcttttgagctgaaagagagaagagagagttatccat 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 accccaatgcaactttcttgatggcttttgagctgaaagagagaagagagagttatccat 743
Query: 544 cccatctggagatctccttgacacatgatctcctaaaagcattttgcatgtttctatttc 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 cccatctggagatctccttgacacatgatctcctaaaagcattttgcatgtttctatttc 803
Query: 604 tatggcatccatgggcttccctctgatccttcatcaaagcaagagaccatgtgctc 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 tatggcatccatgggcttccctctgatccttcatcaaagcaagagaccatgtgctc 859
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1059
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1049
Effective search space: 680801
Effective search space used: 680801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no103_m01.g1 MSMg01no103_m01.g1 CHROMAT_FILE:
MSMg01no103_m01.g1 PHD_FILE: MSMg01no103_m01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:02:46 2005
(504 letters)
>mm_chr1_165539312_165540214
Length = 903
Score = 915 bits (473), Expect = 0.0
Identities = 497/505 (98%), Gaps = 3/505 (0%)
Strand = Plus / Minus
Query: 1 catctgtcctgtggccaaaagaatgaaaagaagagcaacttggtttgtt-atgtggaaga 59
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 703 catctgtcctgtggccaaaagaatgaaaagaagagcaacttggtttgttaatgtggaaga 644
Query: 60 attcagtaagactaaggccatgacacatgtctgagaggagcttccttgagattgttttta 119
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 643 attcagtaagactaaggccatgacacatgtctgaga-gagcttccttgagattgttttta 585
Query: 120 attttttcaaacaaagcataccagaacgctttactaccacttattgaagaacaaagggcg 179
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 584 attttttcaaacaaagcataccagaacgctttactaccacttactgaagaacaaagggcg 525
Query: 180 tgagctctaaacacaaacatcctgcgttccttccagaactttcctgggatcttttagtca 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 tgagctctaaacacaaacatcctgcgttccttccagaactttcctgggatcttttagtca 465
Query: 240 atgaaccttcctggtcaatatttctatttgagacctggctgtttcatggttaaaaacaaa 299
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 464 atgaaccttcctggtcaatatttctatttgagacctggttgtttcatggttaaaaacaaa 405
Query: 300 aggaaacaaaaacaatgacaaaataaaacctcaccttttcccccctcagagaaattaata 359
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 404 aggaaacaaaaacaatgacaaaataaaacctcacctttt-ccccctcagagaaattaata 346
Query: 360 tgattaggatatttatttaacattttttaaaagaaagaaaacaggagtcaaatttctttc 419
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 345 tgattaggatatttatttaacatttttcaaaagaaagaaaacaggagtcaaatttctttc 286
Query: 420 tctatctctcttcttctcaggtatttttcttctctttatttcatttttagtcattgcctc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 285 tctatctctcttcttctcaggtatttttcttctctttatttcatttttagtcatttcctc 226
Query: 480 tactgtcttagtctgaaaaacaaac 504
|||||||||||||| ||||||||||
Sbjct: 225 tactgtcttagtcttaaaaacaaac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 903
Length adjustment: 10
Effective length of query: 494
Effective length of database: 893
Effective search space: 441142
Effective search space used: 441142
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
