Query= MSMg01no104_g17.b1 MSMg01no104_g17.b1 CHROMAT_FILE:
MSMg01no104_g17.b1 PHD_FILE: MSMg01no104_g17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:03:40 2005
(102 letters)
>mm_chr1_187935913_187936414
Length = 502
Score = 190 bits (98), Expect = 3e-53
Identities = 101/102 (99%)
Strand = Plus / Plus
Query: 1 ccttccaacataaataaaacagaaaaacaaaacattgtgagatttggctagagtcgtgat 60
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 201 ccttccaacataaataaaacagaaaaataaaacattgtgagatttggctagagtcgtgat 260
Query: 61 aaaattactgctctaatataaataggaggggaaaagaaaatg 102
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaattactgctctaatataaataggaggggaaaagaaaatg 302
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 102
Length of database: 502
Length adjustment: 8
Effective length of query: 94
Effective length of database: 494
Effective search space: 46436
Effective search space used: 46436
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)
| Query= MSMg01no104_g17.g1 MSMg01no104_g17.g1 CHROMAT_FILE:
MSMg01no104_g17.g1 PHD_FILE: MSMg01no104_g17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:03:40 2005
(476 letters)
>mm_chr1_188064939_188065814
Length = 876
Score = 818 bits (423), Expect = 0.0
Identities = 459/471 (97%), Gaps = 1/471 (0%)
Strand = Plus / Minus
Query: 5 ccatttcctgtatctaccccagcgctgagtgcacagtaaaggctaaataaatgtttgttg 64
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 741 ccatttcctgtatcta-cccagcgctgagtgcacagtaaaggctaaatacatgtttgttg 683
Query: 65 actcaattaatttatcctcatatctctacctcttcactgttagcagactgctgggagata 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 actcaattaatttatcctcatatctctacctcttcactgttagcagactgctgggagata 623
Query: 125 ttcccacagtagccagttcagtgctgtgggatgagcactagtatggggtacacatggaac 184
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 ttcccacagaagccagttcagtgctgtgggatgagcactagtatggggtacacatggaac 563
Query: 185 ccgacagcttgtagactagacacccactccagaagcactcccaacatttcctggtcaaaa 244
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 ccgacagcttgtagacgagacacccactccagaagcactcccaacatttcctggtcaaaa 503
Query: 245 gttaccttgttcctgctgcattctttctagaaaaatctgtgtcttcataagagctgatct 304
| |||||| |||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct: 502 gcaaccttgatcctgctgcattttttctagaaaaatctgcatcttcataagagctgatct 443
Query: 305 ttaactatcatcagactctagcggcggtatttgttttgtttggttgctatgctcaggcat 364
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 442 ttaactatcatcagactctagcggcggcatttgttttgtttggttgctatgctcaggcat 383
Query: 365 gactgcacccatctatcctaggtctaaattacactagcacccacatagcaaagctaacct 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gactgcacccatctatcctaggtctaaattacactagcacccacatagcaaagctaacct 323
Query: 425 gggctccaggattccagtctttcctgaggctacatgtacacccctgtaatg 475
||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 322 gggctccaggattccagtctttcctgaggttacatgtacacccctgtaatg 272
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 876
Length adjustment: 10
Effective length of query: 466
Effective length of database: 866
Effective search space: 403556
Effective search space used: 403556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
