Query= MSMg01no104_j09.b1 MSMg01no104_j09.b1 CHROMAT_FILE:
MSMg01no104_j09.b1 PHD_FILE: MSMg01no104_j09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:03:54 2005
(659 letters)
>mm_chr1_56187245_56188304
Length = 1060
Score = 1245 bits (644), Expect = 0.0
Identities = 653/656 (99%), Gaps = 1/656 (0%)
Strand = Plus / Plus
Query: 4 ggaattcatctctgacgcatgtttaccaatagaaaag-attcaattaatttaattaattc 62
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 204 ggaattcatctctgacgcatgtttaccaatagaaaagtattcaattaatttaattaattc 263
Query: 63 caattgctcttaaaattatattttatatgctagcttagttgctcatatgcctctagaaaa 122
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 264 caattgctcttaaaattatattttatatgctagcttagctgctcatatgcctctagaaaa 323
Query: 123 taacatgtggtcctataaactcagctgttttctggatgacgttttaagcaattttcactg 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 taacatgtggtcctataaactcagctgttttctggatgacgttttaagcaattttcactg 383
Query: 183 tggactgaggagaaagtcatttatgcagcaagaattttaatgaagactgagcacaacaag 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tggactgaggagaaagtcatttatgcagcaagaattttaatgaagactgagcacaacaag 443
Query: 243 caaatacagattcacaattttgtttgctaatttctcacactagcatgaaataatattgtg 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 caaatacagattcacaattttgtttgctaatttctcacactagcatgaaataatattgtg 503
Query: 303 tgtcctatctctgctatctaaatgggcctatgtgttttaaaagaatgcatgaggctaaac 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tgtcctatctctgctatctaaatgggcctatgtgttttaaaagaatgcatgaggctaaac 563
Query: 363 atttaggagctgaaaaactttgattcagaggagaggcacatttacagcctctggatgaaa 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 atttaggagctgaaaaactttgattcagaggagaggcacatttacagcctctggatgaaa 623
Query: 423 atacccgctcactgtcttgtccagataacagagtattcataggcatctcatctgataaac 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 atacccgctcactgtcttgtccagataacagagtattcataggcatctcatctgataaac 683
Query: 483 acacctattttacttatataagcacatgacatcatcgtttaagcccgaccgatttctaag 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 acacctattttacttatataagcacatgacatcatcgtttaagcccgaccgatttctaag 743
Query: 543 cactgcagctgttacaagttatttagaagtctaatttgagcagaatgtgtcacgccaact 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 cactgcagctgttacaagttatttagaagtctaatttgagcagaatgtgtcacgccaact 803
Query: 603 ttgcacacactagctcgcacaggcagtattcacattaaaactttcacctctattaa 658
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 ttgctcacactagctcgcacaggcagtattcacattaaaactttcacctctattaa 859
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1060
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1050
Effective search space: 681450
Effective search space used: 681450
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no104_j09.g1 MSMg01no104_j09.g1 CHROMAT_FILE:
MSMg01no104_j09.g1 PHD_FILE: MSMg01no104_j09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:03:54 2005
(426 letters)
>mm_chr1_56334316_56335141
Length = 826
Score = 683 bits (353), Expect = 0.0
Identities = 396/419 (94%), Gaps = 15/419 (3%)
Strand = Plus / Minus
Query: 20 ggagtttgggaagagactggcatataaatgtacactagttcaaatcttcttcttttttca 79
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 825 ggagtttgggaagagactggcatataaatgtacactagttcaaa---tcttcttttttca 769
Query: 80 taacaccctcaaactgtgtcctttcctatctgcacttaagttcaaacaagacagaaattt 139
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 768 taacaccctcaaactgtgtcctttcctatccgcacttaagttcaaccaagacagaaattt 709
Query: 140 ttggacagcccacataaagtctatgtgtaaaattagccttctttttacctccttagaggg 199
||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 708 ttggacagcccacataacgtctatgtgtaaatttagccttctttttacctccttagaggg 649
Query: 200 acctggagct------------gccacagggagagactctggggaatggactgcacgcct 247
|||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct: 648 acctggagctataacattgtgagccacagggagagactctgggaaatggactgcacgcct 589
Query: 248 ttcctaccaggctcagtctatctgctttacaattgttctgtgatatggtgcttgctttct 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 ttcctaccaggctcagtctatctgctttacaattgttctgtgatatggtgcttgctttct 529
Query: 308 agatctctcccaaaggaaatctagaatgggctcagcacttctattccaccagtgtgcagg 367
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 agatttctcccaaaggaaatctagaatgggctcagcacttctattccaccagtgtgcagg 469
Query: 368 catcagttatctctcttttaatattttcccccttaattggaaataatgttgcattttta 426
||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 468 catcagttatctctcctttaatattttcccccttaattggaaataatgttgtattttta 410
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 426
Length of database: 826
Length adjustment: 9
Effective length of query: 417
Effective length of database: 817
Effective search space: 340689
Effective search space used: 340689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
