BAC Information

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BAC

Clone NameMSMg01-104O01
Chromosome1 (Build37)
Map Location 33,818,391 - 33,818,744
singlet/doubletsinglet
Overlap geneZfp451
Upstream geneEG633498, LOC213711, LOC100040828, EG666108, Prim2, 1700001G17Rik, Rab23, Bag2
Downstream geneOTTMUSG00000022109, B230209C24Rik, Dst, LOC100040913, LOC383629, LOC100040938, Ccdc115, Imp4, Ptpn18, Tesp1, Cfc1, Tesp2, 9430069J07Rik, AA619741
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-104O01.T7 (MSMg01no104_o01.b1)MSMg01-104O01.TJ (MSMg01no104_o01.g1)
ACCAG319378AG319379
length867715
length of high quality
(start - end)
---354 (69 - 422)
definitionCHROMAT_FILE: MSMg01no104_o01.b1 PHD_FILE: MSMg01no104_o01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:04:17 2005CHROMAT_FILE: MSMg01no104_o01.g1 PHD_FILE: MSMg01no104_o01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:04:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATTAATTTTGCGGCGCTATATGACTCACTATATTTCCCAGAAAACGCGGA
ATTCCTGACAATATCTCCTCATCTAGGCATTTGTCTTTTTTCAGAAGTCA
CCCATATCCTTTTAACAATAGAATATCTACTCGTGCCCCTAATCACTAAG
ACACTTCCACACAGAGATAGTATCCTCGTGGGTAAACATTCATAACTCTG
CTATGTGAGAATGCACAACTACATACTCTCACCCAGTCAACAGCTCCAAT
GATCGCAAACAAACATGACAATGGTCTTGAATTACTTTGTGTTCACTGAC
TAGATTAACCTGGGTTTCTTTATCGCTCCTGCAGTGATCGGTGACTCTCT
ATTTCCTTGATACAATATTGTTCTTTCATGTTGATTCATACTGAACTTAT
GCTTATGCCAGATAATGTACACTTCATCACATCTTGTTACGATTATCGTC
CTTTGTATTTACACTCTCATCGTCTTCACTTTCTCTTTTCTATCTTATAC
CATCATTCCAGTTACTGCCTTGCACTGCATTACCCAAACATATCGTATTT
GTTGTTTGTTATTCGAGAACTACCGCTAGCCATACATACGTAATACGACC
TTTCCGCTGCTTAATGACTTTTCATATTTATCTACGTATCCTATACTCTT
ATTCTCTTATTCCCCCTCCCTAACACCCTATTATTTCTATCCATACGTAT
CCCATATCTCTCTATACATCGATTATCCTGCTTTACCCCATTGTCTTACT
ACAACTTCTCCTTCCATTCTAATACCCCAATTACGTCCAATCCTATTCCA
TTTCCTGCCCACCCTCCCCTTTCATCCAATTGTCTTATCACGCGNCTTGC
TGGGTTCTTCTCTATTA
CAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTTACACGAGGAATTCATGCATTTGGGTTACAGCCGTTTTCTAG
GAGGAAAGGTGTGTAAAGTTCTCTTTCCTTAGCAGTGCGTCTTTTTTTGT
ACTTTACAAATGACTCTTTTATTTTTTTAGGAATGAAAATGAATATAAAT
AAAAGGTGCCATAACTCAGTTTTTTTCCAGAAATTCTCTGTGTTATGTGA
CCCTAATGTATAATATACCTTGGAGATGACTGTTTATGATTATTAGAAGA
GAGCGATACACATTGATCACAGAAACAGATTCAAGTCAGTGCGGTTCCAT
GTGCTATTATGCAGCTGTATGCTTGCTCTGATTACAGTTGCACCTTACCA
CAATAAAAACATCTTTAAAGCAACTAACAGGAAATTTTTTCTATCCCTTT
CAGACTTTGGTATGATTTGAAATATCAAAGTATATGTATGGACTTAAACT
TATTTTAATATAAATTTTTTTATATAAATATACTTCTAAAGAAATAGTCG
TAAAGTTTATTCTATTCAGGAATAGTTCTTAACTCCTTACTACTTCAGCT
TCATGTGGGCTGTCTAGTTCCTCACTGCAATTGATCTGCGATGGCATATG
TAGTTCTTACGGGTCTGCGCCTCATTGGGAATAAAAACCTTAACAGCGTA
AGAAGTAGCGCCTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no104_o01.g1 MSMg01no104_o01.g1 CHROMAT_FILE:
MSMg01no104_o01.g1 PHD_FILE: MSMg01no104_o01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:04:17 2005
         (354 letters)



>mm_chr1_33818191_33818944
          Length = 754

 Score =  685 bits (354), Expect = 0.0
 Identities = 354/354 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   attcatgcatttgggttacagccgttttctaggaggaaaggtgtgtaaagttctctttcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 attcatgcatttgggttacagccgttttctaggaggaaaggtgtgtaaagttctctttcc 495

                                                                       
Query: 61  ttagcagtgcgtctttttttgtactttacaaatgactcttttatttttttaggaatgaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 ttagcagtgcgtctttttttgtactttacaaatgactcttttatttttttaggaatgaaa 435

                                                                       
Query: 121 atgaatataaataaaaggtgccataactcagtttttttccagaaattctctgtgttatgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 atgaatataaataaaaggtgccataactcagtttttttccagaaattctctgtgttatgt 375

                                                                       
Query: 181 gaccctaatgtataatataccttggagatgactgtttatgattattagaagagagcgata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 gaccctaatgtataatataccttggagatgactgtttatgattattagaagagagcgata 315

                                                                       
Query: 241 cacattgatcacagaaacagattcaagtcagtgcggttccatgtgctattatgcagctgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 cacattgatcacagaaacagattcaagtcagtgcggttccatgtgctattatgcagctgt 255

                                                                 
Query: 301 atgcttgctctgattacagttgcaccttaccacaataaaaacatctttaaagca 354
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 atgcttgctctgattacagttgcaccttaccacaataaaaacatctttaaagca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 354
Length of database: 754
Length adjustment: 9
Effective length of query: 345
Effective length of database: 745
Effective search space:   257025
Effective search space used:   257025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)