TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTTGTTCATTCCTGAACCCCATTTTTTAATGGGGTTATTTGATTTTC
TGAAGTCCTCCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTA
TCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTT
TGTCCTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTA
GGTCCCATTTGTCAATTCTTGATCTTACAGAGCAAGCCATTGCTGTTCTG
TTCAGGAATCTTTCCCCTGTATCCATATCTTCAAGGCTTTTCCCCACTTT
CTCCTCTATAAGTTTCAGTGCCTCTGGCTTTATGTGAAGTTCCTTGATCC
ACTTACATTTGACCTCAGTACAAGGAGACAACTATGGATCGACTCGCATT
CTTCTACACGATAACTTTCAGTTGTGTCAGCACCACCTGTTCAACATGCT
GTCTTCCTTCCACTGGAAGCTTTTACCTCCCTTGCCGACAATCATGTGAA
CATACCCGTCGTGCGTCCATTTCTGGCCCTCCCATCCTACTACATTCACC
TATCTGCCTGCCTCTATCCTTCCACCTTGCACCTTTTTATCCCAATGCCC
CTGTCCTCCAGTTTTACCTCCCGCTTGGAGATTCCAACAAACGTTCTATT
TACCCCTGAA

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCAGGTATTATCAACCTAGAATTATCTTTGA
TTAGAACTAGGAAGTAGATCAGTGGTAGGGCCCTTGCTGCCACTGTGTGT
CTTAGGGCTCAAATCTCACACCACCAAAAATAAGCAAACAGACAAATGTA
TTTGAAGATAATACACTAAGTTGCTAGAGGATTATTTTTTAAGATATTCT
ACAAAATATGAAAAATTCCATTAGTTACATAAAAATAGTACTCGTAAAAA
TGAGTATTAATTTCTTATTTTTTCTATTTTTGTACATGTTTAATTTCTTA
TACTAAAAAGTATTTTAACTATGACAGCTAATTTATTGATGTAGCTTTTC
TTGAAAATATCTTCTTTTTTAATTATGATTTTTATTAGGTATTTTCTTCA
TTTACATTTCCAATGCTATCCCAAAAGTCCCCCATACCCCTCCCCTACCC
ATCTACTCCTACTTCTTAGCCCTGGCGTTCCCCTTGTACTGAGGCATATA
AAGTTTGCAAGACCAATGGGCCTCTCTTTCCACTGATGGCCAACTAGGCC
CAAAGTATGGACACATCGCCCCTTCTTAGAATTGGGAAAAACACACCCAT
GGAAGGAGTTACAGAGAATAAGTTTGGAGCTGAGACGAAAGGATGGACCC
ATCTAGAGACTGCCAT

Query= MSMg01no104_o11.g1 MSMg01no104_o11.g1 CHROMAT_FILE:
MSMg01no104_o11.g1 PHD_FILE: MSMg01no104_o11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:04:19 2005
         (646 letters)



>mm_chr1_30209260_30210306
          Length = 1047

 Score =  882 bits (456), Expect = 0.0
 Identities = 517/540 (95%), Gaps = 8/540 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggtattatcaacctagaattatctttga---ttagaactaggaagtagatcagtggta 57
           ||||||||||||||||||||||||||||||     || ||||||||||||||||||||||
Sbjct: 538 caggtattatcaacctagaattatctttgaccc--aggactaggaagtagatcagtggta 481

                                                                       
Query: 58  gggcccttgctgccactgtgtgtcttagggctcaaatctcacaccaccaaaaataagcaa 117
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 gggcccttgctgccactgtgtgtcttagggctcaaatctcacaccaccaaaaataagcaa 421

                                                                       
Query: 118 acagacaaatgtatttgaagataatacactaagttgctagaggattattttttaagatat 177
           ||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 420 acaaacaaatgtatttgaagataatacaccaagtttctagaggattattttttaagatat 361

                                                                       
Query: 178 tctacaaaatatgaaaaattccattagttacataaaaatagtactcgtaaaaatgagtat 237
           ||| |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct: 360 tctgcaaaatatgaaaaattccattagttacatataaatagtactcataaaaatgagtat 301

                                                                       
Query: 238 taatttcttattttttctatttttgtacatgtttaatttcttatactaaaaagtatttta 297
           |||||||||| |||||||||||||  ||||||||||||||||||||||||||||||||||
Sbjct: 300 taatttcttaatttttctatttttaaacatgtttaatttcttatactaaaaagtatttta 241

                                                                       
Query: 298 actatgacagctaatttattgatgtagcttttcttgaaaa--tatcttctttttt-aatt 354
           ||||||||||||||||||||||||||||||||||||||||  ||||||||||||| ||||
Sbjct: 240 actatgacagctaatttattgatgtagcttttcttgaaaaaatatcttctttttttaatt 181

                                                                       
Query: 355 atgatttttattaggtattttcttcatttacatttccaatgctatcccaaaagtccccca 414
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 gtgatttttattaggtattttcttcatttacatttccaatgctatcccaaaagtccccca 121

                                                                       
Query: 415 tacccctcccctacccatctactcctacttcttagccctggcgttccccttgtactgagg 474
           ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct: 120 tacccctcccctacccatccactcctacttcttagccctggcattccccttgtactgagg 61

                                                                       
Query: 475 catataaagtttgcaagaccaatgggcctctctttccactgatggccaactaggcccaaa 534
           ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 60  catataaagtttgcaagaccaatgggcctctctttccactgatggtcgactaggcccaaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 646
Length of database: 1047
Length adjustment: 10
Effective length of query: 636
Effective length of database: 1037
Effective search space:   659532
Effective search space used:   659532
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)