BAC Information

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BAC

Clone NameMSMg01-105B02
Chromosome1 (Build37)
Map Location 107,894,004 - 107,894,110
singlet/doubletsinglet
Overlap geneZcchc2
Upstream geneRnf152, LOC100041985, Pign, LOC666249, 2310035C23Rik, LOC100042023, Tnfrsf11a, EG635504
Downstream geneEG435634, Phlpp, LOC626075, Bcl2, LOC100042085, Fvt1, Vps4b, Serpinb5, LOC671141, Serpinb12, Serpinb13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-105B02.T7 (MSMg01no105_b02.b1)MSMg01-105B02.TJ (MSMg01no105_b02.g1)
ACCAG319520AG319521
length708721
length of high quality
(start - end)
330 (45 - 374)111 (143 - 253)
definitionCHROMAT_FILE: MSMg01no105_b02.b1 PHD_FILE: MSMg01no105_b02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:04:34 2005CHROMAT_FILE: MSMg01no105_b02.g1 PHD_FILE: MSMg01no105_b02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:04:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCACCTGCCGAATACCGAATGGCTGACAAGCACCTGAAAAGATGTT
CAACTTCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTC
CACCTCACACCAGTCAGAATGGCTAAGATCAAAATTTCAGGTGACAGCAG
ATGCTGGTGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGG
ATTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGA
AAACTGGACATAGTACTATCGAAGGATCCCACAATACCTCTCCTGGGCAT
ATATCCAGAAGATGCCCCAACTGGTAAGAATGACACGTGCTCCACTATGT
TCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGC
CCCTCAACAGAGGAATGTATACAGAAAATGTGGTACATTTACTCAATGGA
TTACTACTCAGCTATTTACAAAGAATGAATTTATGAAATTCCTAGCCAAA
TGGATGGACCTGGAGGGCATCTTCCTGAGTGAGTTAACCCTTTCATTAAA
GGACCCATCCAATATGTACTCACTGATCTACGTATATTACCCCATATATT
TACCATACCCCTGATATACGATACAATTTGCCCAATTTATGAATCTTATC
ACCAACCA
CAATGTTTCTCCCACCGATGACATGGGXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTCCCCGCAAAATTCTCTGCTCGTGCAG
TAATTCTGGTTTGTAAACAGTCAGTGTGACAGCGCAATGGTCTGTGGGGT
GTTTGTTATGGGTAGTGGAGGCCCAGCCCTGGGTCCATTTCCTTTTGTTC
TTGAGCTCTAGGGAATTTTTGACCTTTGGTTCCCTGCCAAGAGGTTCCTC
AGCAGTGTTCGTTGCTCACTCAAGGAGTAGTTTATCTGAGGCTTTATTTT
ATATGTATGCATATGTGACATGTGTGTCTGGTACTCTCTGTGGGGCCATC
ACACACATGTTGCATACATTTACAATCATATTTAATACCTAAATCAATAG
TACCGTTTCAACTAAATTACATCGCTCTGACGAAACTGAATTAACTTATA
ATAGATAAGTCTCTGTATCTGACTTCCGACACACCAGAAGAGGCCGTCTG
ATCTCATTATGGGTGTTTTTGAGTTCCGTTTTTGTTCCCATTCGAACTCA
TGACCCTTGTCCCATTCCTCAGCCCTCCGATAGAATCCCCACATCACCTC
TTATTTAACTTTTCGACCTCATTGCATAAGTTGCTCATCGCTACCTCTTA
TTTTTATAACCCCGGTCCTATCTTATGTAACTTCTGCAACCACTGCCTTT
ACTACTCACCCCGCTTAAACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no105_b02.g1 MSMg01no105_b02.g1 CHROMAT_FILE:
MSMg01no105_b02.g1 PHD_FILE: MSMg01no105_b02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:04:34 2005
         (111 letters)



>mm_chr1_107893804_107894314
          Length = 511

 Score =  176 bits (91), Expect = 3e-49
 Identities = 103/107 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtggggtgtttgttatgggtagtggaggcccagccctgggtccatttccttttgttctt 60
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtggggtgcttgttatgggtagtggaggcccagccctgggtccatttccttttgttctt 260

                                                          
Query: 61  gagctctagggaatttttgacctttggttccctgccaagaggttcct 107
           | ||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct: 261 gtgctctagggaatttttggcctttggttccctgccaagtggttcct 307


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 3
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 111
Length of database: 511
Length adjustment: 8
Effective length of query: 103
Effective length of database: 503
Effective search space:    51809
Effective search space used:    51809
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)