TCAAATTTGCGGCGCTAAACGACTCCTATTTCGAGAGATCCGCGGAATTC
ACCAGAATTCACAGTGTGGTGCCTTTTTGTTATATTTAATACTATTCTAG
TATAAGTATGCTTTTATAGCAAATATCTTGTTTTGGGAGAAAACAAAATT
CTTATAATTGACCCTGCACTTTTAATTTCTGTGCGTCATGTATAAGCATA
ACATGCATATGATATATTAAATAGATGGAATGCAAAAATATAATTATGAG
AGAAATATATTATACAAAGGAATGAAAATCTATAAATAAAAGCATGCCCT
TTGCTTGACTTGATTCGTTCAACTATAGTTTAAAAGACAGTCCTTTTACT
TTTGCTATCAAAAGAGAAAAACAAGGGCAAGCATATATGGATTCTTTAAT
TGCGACATCCTGACTGATTGCAATGTGGTATCCAACATGACGCGATGTTT
TGACTACATGGCTGCAGCAGACTATAATTTAAATGCCATTAAAGAGACAC
AAGGCCTAGCACCAAGGCAGGAATGCTGTGAAATCTTTTGGTCTGCAGTC
ACAATGCAGATCAAGTTGTTCTCTAATCTCTCAGTACTGAAGTCTGCTGT
CCAGAAGGAAAATATTTTTGTGTGTGTGCTTCCGCCTTAAACTAAGACAG
ACTAGATTTTCCATCAGCGTCACCTTGTTAACACCACGTAAAAAGTAGCA
C

CCTGATTCTTTCAACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATA
CCGAATGGCAGAGAAGCACCTGAAAAAATGTTCACCATCCTTAATCATCA
GGGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGA
ATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGG
AGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAAC
TACTCTGGAAATCCGTCTGGCAGTTCCTCAGAATATTGGACATAGTAGTA
CCGGAGGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCC
AACTAGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTA
TAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGG
ATACAGAAAATGTGGTACATCTACATAATGGAGTACTACTCAGTTATTAA
AAAGAATGAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCA
TCATCCTGAGTGAGGTAACACATTCACAAAGGAACTCACACCATATGTAC
TTCCTGATAAGTGGATATTAGCCCCAAACCTAGGATACCCCCAGATATAA
TATACAATTTCCTAAAC

Query= MSMg01no105_b10.b1 MSMg01no105_b10.b1 CHROMAT_FILE:
MSMg01no105_b10.b1 PHD_FILE: MSMg01no105_b10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:04:36 2005
         (568 letters)



>mm_chr1_139838605_139839571
          Length = 967

 Score = 1044 bits (540), Expect = 0.0
 Identities = 552/556 (99%), Gaps = 1/556 (0%)
 Strand = Plus / Minus

                                                                       
Query: 13  ccagaattcacagtgtggtgcctttttgttatatttaatactattctagtataagtatgc 72
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767 ccagaattcagagtgtggtgcctttttgttatatttaatactattctagtataagtatgc 708

                                                                       
Query: 73  ttttatagcaaatatcttgttttgggagaaaacaaaattcttataattgaccctgcactt 132
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 ttttatagcaaatatcttg-tttgggagaaaacaaaattcttataattgaccctgcactt 649

                                                                       
Query: 133 ttaatttctgtgcgtcatgtataagcataacatgcatatgatatattaaatagatggaat 192
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 ttaatttctgtgcgtcatgtataagcataacatgcatatgatatattaaatagatggaat 589

                                                                       
Query: 193 gcaaaaatataattatgagagaaatatattatacaaaggaatgaaaatctataaataaaa 252
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 gcaaaaatataattatgagagaaatatattatacaaaggaatgaaaatctataaataaaa 529

                                                                       
Query: 253 gcatgccctttgcttgacttgattcgttcaactatagtttaaaagacagtccttttactt 312
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 gcatgccctttgctcgacttgattcgttcaactatagtttaaaagacagtccttttactt 469

                                                                       
Query: 313 ttgctatcaaaagagaaaaacaagggcaagcatatatggattctttaattgcgacatcct 372
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 ttgctatcaaaagagaaaaacaagggcaagcatatatggattctttaattgcgacatcct 409

                                                                       
Query: 373 gactgattgcaatgtggtatccaacatgacgcgatgttttgactacatggctgcagcaga 432
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 gactgattgcaatgtggtatccaacatgacgcgatgttttgactacatggctgcagcaga 349

                                                                       
Query: 433 ctataatttaaatgccattaaagagacacaaggcctagcaccaaggcaggaatgctgtga 492
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 ctataatttaaatgccattaaagagacacaaggcctagcaccaaggcaggaatgctgtga 289

                                                                       
Query: 493 aatcttttggtctgcagtcacaatgcagatcaagttgttctctaatctctcagtactgaa 552
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 288 aatcttttggtctgcagtcacaatgcagatcaagttgttctctgatctctcagtactgaa 229

                           
Query: 553 gtctgctgtccagaag 568
           ||||||||||||||||
Sbjct: 228 gtctgctgtccagaag 213


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 967
Length adjustment: 10
Effective length of query: 558
Effective length of database: 957
Effective search space:   534006
Effective search space used:   534006
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)