CCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAAGGCCCATCCCTAAACATGATAAAAGAAATCTACAGCAAACC
AGTAGCCAACATCAAAGTAAATGGCAAGAAGCTGGAAGCAATCCCACTAA
AATCAGGGACTAGACAAAGCAGCCCACTTTCTCCCTACCTATTCACCATT
GTACTTGAAGTCCTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGG
GATACAAATTGGAAAAGAAGAAGTCAAAATATCACTTTTTGCAGATGATA
TGATTGTAAATATAAATGACCCTAAAAATTCCACCAGAGAACTTCTAAAT
CTGATAAACAGCTTCAGTGAAGTAGCTGGATATAAAATTAACTCAAACAA
GTCAATGGCCTTTCTCTACACAAAGAATAAACAGGCTGAGAAAGAAATTA
GGGTCTTCATTTCTATTCCATTGATCTACCTGTCTTTCTCTGTACCAACA
CCTTGCAGTTTTTATCACTATTGCTCTGTAGTAAAGCATGAGATCAAGGA
TGGTGATTCCTCCAACTGTTTTTCTATTTTAAGAATTGTTTTTGCTATCC
TGTTTTTTTGTTTGGCTTGTTTTGGCTTTGGTTTTTTGCTGTCCTTTTGT
TTTGCTTCTTTTTTTCTGTTCTGCTTT

CCATGCAGTGCGAGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAAAAGTATAAAGGAGACCTCACACATTTTT
GCTACACTATTTGGTCTTAGAAAACTTTGCCAGGGGATATATATGTCCCT
TTTGAAATAAACTAAAATAAATAAAATGCAACATCAGACCAGGCTCAGTT
TCCAAAGTTAAAAGAATGAGAAATAAGTTAAAAAAGAGACAGAATTCAAG
AGAAGCATGGTCTCTCTTTTGTCTAGAGATAGAGTACATTCCTCATGATC
GTCCTTAGGGAAAGAATGTCTCCAGGAAAGTTAACACGTGTCAAGGCAGT
GTGTTTAGTTTTTAGAGGGAAACCTTCATTTATTAGTACTTTTTCTTTTC
TATTTCATTAAATCACTCTTTTATGAAATACTCACAAAAAAGTAAAATGA
GTCTCTTAAATCAAATTTCGCTTGCCCCTGCTATGTACAGGATAACTATA
CAGTAAATATAATGTCACTCAACTCAGGCACTATTGCTTCAGTGGGCTAA
AAAGTTAAATTAAGTCCTATTCTTGTTACATAAAATATTTTTCTCTATAA
TGATGAAAACAAAATTCCAGATGCCTAAATACATTTTTTTAAAAAATTTA
TGGGAATATATCTGCCATTTTTGTATAACAAAAT

Query= MSMg01no105_e01.g1 MSMg01no105_e01.g1 CHROMAT_FILE:
MSMg01no105_e01.g1 PHD_FILE: MSMg01no105_e01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:04:49 2005
         (448 letters)



>mm_chr1_27728917_27729764
          Length = 848

 Score =  828 bits (428), Expect = 0.0
 Identities = 443/448 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaagtataaaggagacctcacacatttttgctacactatttggtcttagaaaactttgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 aaaagtataaaggagacctcacacatttttgctacactatttggtcttagaaaactttgc 589

                                                                       
Query: 61  caggggatatatatgtcccttttgaaataaactaaaataaataaaatgcaacatcagacc 120
           ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||
Sbjct: 588 caggggatatatatgtcccttttggcataaactaaaataaataaaatgcaacatcagacc 529

                                                                       
Query: 121 aggctcagtttccaaagttaaaagaatgagaaataagttaaaaaagagacagaattcaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 aggctcagtttccaaagttaaaagaatgagaaataagttaaaaaagagacagaattcaag 469

                                                                       
Query: 181 agaagcatggtctctcttttgtctagagatagagtacattcctcatgatcgtccttaggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 agaagcatggtctctcttttgtctagagatagagtacattcctcatgatcgtccttaggg 409

                                                                       
Query: 241 aaagaatgtctccaggaaagttaacacgtgtcaaggcagtgtgtttagtttttagaggga 300
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 aaagaatggctccaggaaagttaacacgtgtcaaggcagtgtgtttagtttttagaggga 349

                                                                       
Query: 301 aaccttcatttattagtactttttcttttctatttcattaaatcactcttttatgaaata 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 aaccttcatttattagtactttttcttttctatttcattaaatcactcttttatgaaata 289

                                                                       
Query: 361 ctcacaaaaaagtaaaatgagtctcttaaatcaaatttcgcttgcccctgctatgtacag 420
           |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct: 288 ctcacaaaaaagtaaaatgagtctcttaaatcaaatttagcttgcgcctgctatgtacag 229

                                       
Query: 421 gataactatacagtaaatataatgtcac 448
           ||||||||||||||||||||||||||||
Sbjct: 228 gataactatacagtaaatataatgtcac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 448
Length of database: 848
Length adjustment: 10
Effective length of query: 438
Effective length of database: 838
Effective search space:   367044
Effective search space used:   367044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)