BAC Information

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BAC

Clone NameMSMg01-105G19
Chromosome1 (Build37)
Map Location 56,285,729 - 56,437,000
singlet/doubletdoublet
Overlap genenone
Upstream geneMars2, LOC666793, Boll, EG632964, LOC667237, LOC626009, 9130227L01Rik
Downstream geneHsfy2, Satb2, EG329160, 9130024F11Rik, LOC100042869, LOC383509, 1700066M21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-105G19.T7 (MSMg01no105_g19.b1)MSMg01-105G19.TJ (MSMg01no105_g19.g1)
ACCAG319783AG319784
length703701
length of high quality
(start - end)
515 (63 - 577)469 (67 - 535)
definitionCHROMAT_FILE: MSMg01no105_g19.b1 PHD_FILE: MSMg01no105_g19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:05:03 2005CHROMAT_FILE: MSMg01no105_g19.g1 PHD_FILE: MSMg01no105_g19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:05:03 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,285,729 - 56,286,243)(56,436,532 - 56,437,000)
sequence
ATTTGCGGCCGTATACGACTCCTATAGTCAGAGAATCCGCGGAATTCTAG
TCTGGTGCCAAGAAAAAGCATGTGCTTGCCTCATGGAATATTGGCACTTA
GGTCAAGGGGAAATATCTAAAACGACACAGCGGATGGCGTAGAATGAAAC
TCAGATTTAAACACAAACAAGAGGGTAATACAGCCTGGCACCGACTGGCT
ACTGCAGCAGTGTATCTGAAGGTTATGTTTTATGTTTATTAGTTCCATCC
AGATGGTGTTTTATGTCCTTAATAACTTTGTCCCTGACTAAGCCATGGAC
CTACCATTTGACAAGCCCAGTAGGAAGTGTCTATCAGCAAAAAAAAAGTC
ATTTCATAATCAGAAACATCACTTGGAACATTTGGACATCATTGTGAAAG
GGGCTGGTTTCTTTCATGTCAATGCATGTGGCAGTTGACAAATGAAGACA
GCTTTTCCAAACTGAATCTAAATTCAGTGAGCTCCAGGGATGCCATTAAA
AGGAATATAATTCAGTGCTAATATTTATATACATAATAATTCCATTGTAA
GAAATTGATTTACTTTAATGCACATTTACTTTTAGATGACTGCAAAACTA
GTGTACAACATATTATTGCAGGGCTACAAATTGGAAGACTGAAGCATGAG
TTCTTCCCATATTTGCCTCTAGATCTATGTCCCCTTAGGCCTCTCAGCTC
AAA
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXACTTTGTGGGGTAGACTAGGCAGAGACTAAAACT
AGAGTAGAAAGGGTCAGAAGAAAATGTCAGGATATAGGAGTATTTAGGAT
GGAGGGAACCTGGAGATAGACACTAAGTCACATTCTGAATGCACAGAACT
GGAGAGGAGAGGCAGAGAGGCATTATGTGGTACCCATGAGCACGTACAAG
TGTATGTGACATAAATTTAAATATATGTCATTTGAATTTAAAAGCCAAAA
CAGTATGTTGGATATTCATATCTTCATGCAATCTCCTATTCAGTATTTCC
TTTTATTAACTGACTCTTCCCATCCTTCACACTTAAAGTTTTTAAACCTT
TACTTAAATTTAATTCTCTTAGGATATCTTTAGTTAATGCTCTAACCGTT
TCCCTAAACAAAAAATGGGAAAATTATCATGTATTTATTTCCTGCATCTC
TTTTTAAAGCCACATCTAAGCTTCCCATCACGTGCTGAAACAGCCTAAGG
CTTGCTTGTCTGTAGATTGACCTGTGGGTCAAAGTCATTCTCTCTTAAAA
ACTTAGCCCTCCAGGAATCCTGAATTATGTTCAGTTTTGCTGTTTGGAAT
TGATTTCAACGATATTTGTTCTCACAATAATTTTAATGTCCCATTCCAGT
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no105_g19.b1 MSMg01no105_g19.b1 CHROMAT_FILE:
MSMg01no105_g19.b1 PHD_FILE: MSMg01no105_g19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:05:03 2005
         (515 letters)



>mm_chr1_56285529_56286443
          Length = 915

 Score =  957 bits (495), Expect = 0.0
 Identities = 510/515 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaaagcatgtgcttgcctcatggaatattggcacttaggtcaaggggaaatatctaaaa 60
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaaagcatgtgctcgcctcatggaatattggcacttaggtcaaggggaaatatctaaaa 260

                                                                       
Query: 61  cgacacagcggatggcgtagaatgaaactcagatttaaacacaaacaagagggtaataca 120
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cgacacagtggatggcgtagaatgaaactcagatttaaacacaaacaagagggtaataca 320

                                                                       
Query: 121 gcctggcaccgactggctactgcagcagtgtatctgaaggttatgttttatgtttattag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcctggcaccgactggctactgcagcagtgtatctgaaggttatgttttatgtttattag 380

                                                                       
Query: 181 ttccatccagatggtgttttatgtccttaataactttgtccctgactaagccatggacct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttccatccagatggtgttttatgtccttaataactttgtccctgactaagccatggacct 440

                                                                       
Query: 241 accatttgacaagcccagtaggaagtgtctatcagcaaaaaaaaagtcatttcataatca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 accatttgacaagcccagtaggaagtgtctatcagcaaaaaaaaagtcatttcataatca 500

                                                                       
Query: 301 gaaacatcacttggaacatttggacatcattgtgaaaggggctggtttctttcatgtcaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaaacatcacttggaacatttggacatcattgtgaaaggggctggtttctttcatgtcaa 560

                                                                       
Query: 361 tgcatgtggcagttgacaaatgaagacagcttttccaaactgaatctaaattcagtgagc 420
           |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgcatgtggttgttgacaaatgaagacagcttttccaaactgaatctaaattcagtgagc 620

                                                                       
Query: 421 tccagggatgccattaaaaggaatataattcagtgctaatatttatatacataataattc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 621 tccagggatgccattaaaaggaatataattcagtgctaatatttatatatataataattc 680

                                              
Query: 481 cattgtaagaaattgatttactttaatgcacattt 515
           |||||||||||||||||||||||||||||||||||
Sbjct: 681 cattgtaagaaattgatttactttaatgcacattt 715


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 915
Length adjustment: 10
Effective length of query: 505
Effective length of database: 905
Effective search space:   457025
Effective search space used:   457025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no105_g19.g1 MSMg01no105_g19.g1 CHROMAT_FILE:
MSMg01no105_g19.g1 PHD_FILE: MSMg01no105_g19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:05:03 2005
         (469 letters)



>mm_chr1_56436332_56437200
          Length = 869

 Score =  830 bits (429), Expect = 0.0
 Identities = 459/469 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   actttgtggggtagactaggcagagactaaaactagagtagaaagggtcagaagaaaatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 actttgtggggtagactaggcagagactaaaactagagtagaaagggtcagaagaaaatg 610

                                                                       
Query: 61  tcaggatataggagtatttaggatggagggaacctggagatagacactaagtcacattct 120
           ||||||||| |||||||||||||||||||||| |||||||||||  ||||||||||||||
Sbjct: 609 tcaggatatgggagtatttaggatggagggaatctggagatagatgctaagtcacattct 550

                                                                       
Query: 121 gaatgcacagaactggagaggagaggcagagaggcattatgtggtacccatgagcacgta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 549 gaatgcacagaactggagaggagaggcagagaggcattatgtggtacccataagcacgta 490

                                                                       
Query: 181 caagtgtatgtgacataaatttaaatatatgtcatttgaatttaaaagccaaaacagtat 240
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 489 caagtgtatgtgacataaatgtaaatatatgtcatttgaatttaaaagccaaaacagtat 430

                                                                       
Query: 241 gttggatattcatatcttcatgcaatctcctattcagtatttccttttattaactgactc 300
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 gttggatatgcatatcttcatgcaatctcctattcagtatttccttttattaactgactc 370

                                                                       
Query: 301 ttcccatccttcacacttaaagtttttaaacctttacttaaatttaattctcttaggata 360
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 369 ttcccatccttcacacttaaagtttttaaacctttacttaaatttaattttcttaggata 310

                                                                       
Query: 361 tctttagttaatgctctaaccgtttccctaaacaaaaaatgggaaaattatcatgtattt 420
           ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||
Sbjct: 309 tctttagttaatgctctaaccgtttccctaaacaaagcatgggaaaattatcatgtattt 250

                                                            
Query: 421 atttcctgcatctctttttaaagccacatctaagcttcccatcacgtgc 469
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 atttcctgcatctctttttaaagccacatctaagcttcccatcacgtgc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 869
Length adjustment: 10
Effective length of query: 459
Effective length of database: 859
Effective search space:   394281
Effective search space used:   394281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)