AAATTTGCGGCGCTATACGACTCCTATTTCCAGAAATCCGCGGAATTCTC
TGTTTTCCACTTAACAGCCAGCACATTAGGATTAATGTCAATCCAATTTG
CTGTGTTCCATGACTTTTTTTTTTCCAATTAGAATGGCAAAACACATTTC
TGGCTGGCCTCAGATTTCATATTTCACTGTCCCTCTCTTGATTTCTTGCC
TTTTCATGATCTGTAATAAAATATTTCACTTTGATACCCAAGGGATATGT
TGTTTATAAATCAAATAATAAAGATAAGTGAACATGCCATAAAATGATCC
CCTGCTTGCACTATTCCATCCCTACAGCCATTTCCTGAAATGACAATTTT
ACAAATTTTATTTCTTGGTTTAGCCCTATAACATTAAATATCAGACATTT
TTCTTGACTAGTGAACAGCAGACACTACTGATCAAATTTCCTTTATAAAA
AATGGTCAATTCATTCATGAATCTAATACCTATCTTCATCTCTCTATATG
TCTTGGCTAATTAGCAGAGGTAGATTAATTTTCCACTTTCATATAAAATG
CTGTTGTTTATCTTTTCAGTACTTAATGGATTAAATAATCATTTTCTTCA
CTTATTTCTATTCAGTAATTGACTTTCTACAATGTACACAGTAATCTTTT
TTCTTTTTCTGAACAAAATTTTTTATTAATTATCATTTACATTTN

TAATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCTCTTCTATCTCCTGTTCTCTGTTTGTGAA
ACTTACTGCTGTTCAAATTTTTAATTTTTTTTAAGAATTCTTTCCACTTG
TCTTTTCTTTATTGCTTCTATTTTCGTTTTCAGGTCTTGAATAATTTTAT
TCATTTTTTTCAACCATTTGCATTTTCTTGATTTTCTTTAAGGGATTCAT
TAATTTCTTCTAATTGTTTGTGTTTCCCTGAATATAAAGAATTCATTCAT
TCATTTCATGTAAAGGATCTTTAACATCTTCATAAAGCTGGTATTAATGT
GATTTTCTTATGTCTCACCTATGCTGGAATATTCAGAGCCTGCTGTATTG
TGATAGCTGAGTTCTACTGCAAACATATTGCTCTGCCTGTTATTACCTAT
GTTTTTATACTGTCTACTACTGACTGCCCTCTACCCTGCAGGTTCCTGTA
CTGTGTTCTCACATTGACTAATAAACATCTGGATTTGCGTCTAATATTTG
TCCACTATCTGATTTACCCTTTTGTTTTTTGCTTGTTAACCTATCTTATA
TCCTGATTCTTTAACCTCCCTTCTAACGAAATATTTGCTCATTTACTAAT
CTGTATATCCCCAAATTACTTCTCTTTCCTTCCACTTTATATTTCCATTC
TCT

Query= MSMg01no105_k09.b1 MSMg01no105_k09.b1 CHROMAT_FILE:
MSMg01no105_k09.b1 PHD_FILE: MSMg01no105_k09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:05:21 2005
         (504 letters)



>mm_chr1_26508273_26509177
          Length = 905

 Score =  969 bits (501), Expect = 0.0
 Identities = 504/505 (99%), Gaps = 1/505 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagccagcacattaggattaatgtcaatccaatttgctgtgttccatgac-ttttttttt 59
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 705 cagccagcacattaggattaatgtcaatccaatttgctgtgttccatgactttttttttt 646

                                                                       
Query: 60  tccaattagaatggcaaaacacatttctggctggcctcagatttcatatttcactgtccc 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 tccaattagaatggcaaaacacatttctggctggcctcagatttcatatttcactgtccc 586

                                                                       
Query: 120 tctcttgatttcttgccttttcatgatctgtaataaaatatttcactttgatacccaagg 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 tctcttgatttcttgccttttcatgatctgtaataaaatatttcactttgatacccaagg 526

                                                                       
Query: 180 gatatgttgtttataaatcaaataataaagataagtgaacatgccataaaatgatcccct 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 gatatgttgtttataaatcaaataataaagataagtgaacatgccataaaatgatcccct 466

                                                                       
Query: 240 gcttgcactattccatccctacagccatttcctgaaatgacaattttacaaattttattt 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 gcttgcactattccatccctacagccatttcctgaaatgacaattttacaaattttattt 406

                                                                       
Query: 300 cttggtttagccctataacattaaatatcagacatttttcttgactagtgaacagcagac 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 cttggtttagccctataacattaaatatcagacatttttcttgactagtgaacagcagac 346

                                                                       
Query: 360 actactgatcaaatttcctttataaaaaatggtcaattcattcatgaatctaatacctat 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 actactgatcaaatttcctttataaaaaatggtcaattcattcatgaatctaatacctat 286

                                                                       
Query: 420 cttcatctctctatatgtcttggctaattagcagaggtagattaattttccactttcata 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 cttcatctctctatatgtcttggctaattagcagaggtagattaattttccactttcata 226

                                    
Query: 480 taaaatgctgttgtttatcttttca 504
           |||||||||||||||||||||||||
Sbjct: 225 taaaatgctgttgtttatcttttca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 905
Length adjustment: 10
Effective length of query: 494
Effective length of database: 895
Effective search space:   442130
Effective search space used:   442130
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)