XXXXXXXXXXXXXXXXXXXXXXXXCTATTGCCAGAAGACCGCGGAATTCC
ATTGATCTCGCTACACTCAAATGCTAATTTTCCAATTACAGCATTTTATT
TAAACTGCTGCTTTGTCTTATGCATAAATTATTTTATTTTGTCTCTTTTA
AACTTTAGATATTTTTCTTCCACCCCATTGAGTCATGAATATTTGCATAT
TGTACTGCTTGGTTTTTATCAACCTGACACAGTTCTAGGAAGAGGAAACT
AAACCTGAGAAAATGCATCCATCAGATAGCCCTGTGGGCAAGACTGTGGG
GCATTTTTCTGATTAATTGACTCATCTGGGAAATCCCAACCTACTGGGAT
AATACCACTCATGAATAGGGTGCCTATTATCATATAAGAAAATAAGAAAC
CAATCTGTGGCTTATAAGCCAGTAATCAGAGTTCATTATTCTTCATGGCC
TCTGCTTAATTTCTTACCTCCAGTTTTCTGCCCTGCTTGAGTTCCTCCCC
TGACTCCCCTCATTGATGTACTGTGCCTGGAACACATAAGCCAAACGAAG
CCTTTCATCGGTAGTCTGTCTATGATCATACTGTTTCCCACAATAACAGA
ACACATTTGTTTTATGCATAACCACATTTGATGGAACATAGCTTTATCAA
TTTCTCATCATGACTCATTATTAGGCATTTCCTGTTTTGAACCCTTCATA
GTTTTCT

GTGCCTTTCTCCTATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCTTTAGCTCTGTT
CCCAAATTTTAATATGGTTATTTGATTCTCTGCCCCCTAACTTCTTGAGT
TCTTTGTATATATTAGATATTAGCACTCTATCCGATGTAGGATAGGTAAA
GATCTTTTCCCAATATGTTGGTCGCTGCTTTGTCCTTTTGACAGTGTCCT
TTGCTTCACAGAAGCTTTGCAATTTTATGATGTCCCATTTGTCTTGCCCT
TTACTTTGATCATTAACCAATTGTTGTTCTGTTCTTTTAACATTTCCCCT
GTGCCTTTGTGTTCAAGAATTTCCTCCGTATTCTCTCCCATTAGAGTCAG
TGTTCTCTGCTATTACTCGATAGCCCCTCGATTCCCTTGATCCTGACTCC
CGTATCCGCGGCCATTAATGGATTATGAACTGTATCAACGCCCGACTGCT
TTGTTTTTCTACTTGCTGACTTTCCCGTTTAACCTCCTCCCCCTTGTCGA
CCTTCGTCTTCTTCTCCTTTTCCTTTTTCCCCCCCCTCCTATCCGTTTCC
CTTTTCCACATTCCTTTCCCTCTTACTCAGTGTGTAGTTCCTTTCTTGAT
TCCTCCATTCCTCTTTTTCCATTCCTCCCTGCCCGCTCCTCTGCCCCTAT
CCTTCCTCTCCCATCCTTTCTTCTTCGTTACCCCACGTATACCG

Query= MSMg01no105_n20.b1 MSMg01no105_n20.b1 CHROMAT_FILE:
MSMg01no105_n20.b1 PHD_FILE: MSMg01no105_n20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:05:38 2005
         (370 letters)



>mm_chr1_26278781_26279551
          Length = 771

 Score =  650 bits (336), Expect = 0.0
 Identities = 360/368 (97%), Gaps = 3/368 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccattgat-ctcgctacactcaaatgctaattttcca-attacagcattttattt 62
           ||||||||||||  || | ||||||||||||||||||||||| |||||||||||||||||
Sbjct: 205 gaattccattgaaactgg-tacactcaaatgctaattttccacattacagcattttattt 263

                                                                       
Query: 63  aaactgctgctttgtcttatgcataaattattttattttgtctcttttaaactttagata 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aaactgctgctttgtcttatgcataaattattttattttgtctcttttaaactttagata 323

                                                                       
Query: 123 tttttcttccaccccattgagtcatgaatatttgcatattgtactgcttggtttttatca 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tttttcttccaccccattgagtcatgaatatttgcatattgtactgcttggtttttatca 383

                                                                       
Query: 183 acctgacacagttctaggaagaggaaactaaacctgagaaaatgcatccatcagatagcc 242
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 acctcacacagttctaggaagaggaaactaaacctgagaaaatgcatccatcagatagcc 443

                                                                       
Query: 243 ctgtgggcaagactgtggggcatttttctgattaattgactcatctgggaaatcccaacc 302
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 444 ctgtgggcaagactgtggggcatttttctgattaattgacacatctgggaaatcccaacc 503

                                                                       
Query: 303 tactgggataataccactcatgaatagggtgcctattatcatataagaaaataagaaacc 362
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tactgggataatgccactcatgaatagggtgcctattatcatataagaaaataagaaacc 563

                   
Query: 363 aatctgtg 370
           ||||||||
Sbjct: 564 aatctgtg 571


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 771
Length adjustment: 9
Effective length of query: 361
Effective length of database: 762
Effective search space:   275082
Effective search space used:   275082
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)