Query= MSMg01no105_o19.b1 MSMg01no105_o19.b1 CHROMAT_FILE:
MSMg01no105_o19.b1 PHD_FILE: MSMg01no105_o19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:05:43 2005
(387 letters)
>mm_chr1_65690903_65691686
Length = 784
Score = 704 bits (364), Expect = 0.0
Identities = 378/384 (98%), Gaps = 3/384 (0%)
Strand = Plus / Minus
Query: 4 gaattcttaaagatgtgtcagtaaaattttatgcaaacagaaatgctccttttccaggga 63
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 gaattcttaaagatgtgttagtaaaattttatgcaaacagaaatgctccttttccaggga 525
Query: 64 aatctcagaagcaagtggaaaaagccttctttctgtcctctttcttgtttaaaataaata 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 aatctcagaagcaagtggaaaaagccttctttctgtcctctttcttgtttaaaataaata 465
Query: 124 tagcttccttctcagaaaatgattatatggatttgtccaatgttttaaagtaaccagaca 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 tagcttccttctcagaaaatgattatatggatttgtccaatgttttaaagtaaccagaca 405
Query: 184 ttgtaattatatatcctacataacatatccttgggaatttcttgactgtgagagattttg 243
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 ttgtaattatatatcctgcataacatatccttgggaatttcttgactgtgagagattttg 345
Query: 244 tttttttttttttttgcttttctcattaagtggttacatataaaatttcactggaagtat 303
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 gttttttttttt---gcttttctcattaagtggttacatataaaatttcactggaagtat 288
Query: 304 atatgccttgaatggtactgactaaaaatacagaatttttcattgatcgaaggaaaatcc 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 atatgccttgaatggtactgactaaaaatacagaatttttcattgatcgaaggaaaatcc 228
Query: 364 acaacccttgaaagctgacagatt 387
||||||||||||||||||||||||
Sbjct: 227 acaacccttgaaagctgacagatt 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 387
Length of database: 784
Length adjustment: 9
Effective length of query: 378
Effective length of database: 775
Effective search space: 292950
Effective search space used: 292950
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no105_o19.g1 MSMg01no105_o19.g1 CHROMAT_FILE:
MSMg01no105_o19.g1 PHD_FILE: MSMg01no105_o19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:05:43 2005
(246 letters)
>mm_chr1_65494996_65495644
Length = 649
Score = 439 bits (227), Expect = e-128
Identities = 241/247 (97%), Gaps = 3/247 (1%)
Strand = Plus / Plus
Query: 1 agttctttgtgtagttgctggaacacttgtggcagtggatgtgtggttccatcttttctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agttctttgtgtagttgctggaacacttgtggcagtggatgtgtggttccatcttttctc 260
Query: 61 tctt---gggggggtgcactgggaactgtggcttttggtatattgcttgtgcagatagac 117
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 261 tctttgggggggggtgcactgggaactgtggcttttggtatattgcttgtggagatagac 320
Query: 118 aactgtgactttcaggtgaaactggtgtcactggtctctaatggctagactgcacctcat 177
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct: 321 aactgtgactttcaggtgaaactggtgtcactggcctctaatggctagactgtacctcat 380
Query: 178 cctgctgttctccaaggtagggggcctgacttctgaatagcctacagaaaagttggtgca 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctgctgttctccaaggtagggggcctgacttctgaatagcctacagaaaagttggtgca 440
Query: 238 tttgata 244
|||||||
Sbjct: 441 tttgata 447
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 649
Length adjustment: 9
Effective length of query: 237
Effective length of database: 640
Effective search space: 151680
Effective search space used: 151680
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
