BAC Information

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BAC

Clone NameMSMg01-105P15
Chromosome1 (Build37)
Map Location 24,856,314 - 24,856,701
singlet/doubletsinglet
Overlap genenone
Upstream geneSmap1, 1110058L19Rik, 4921533L14Rik, LOC665808, Col9a1, Col19a1, LOC100040475, LOC665829, Lmbrd1
Downstream gene4930472D16Rik, LOC669171, Bai3, LOC665595
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-105P15.T7 (MSMg01no105_p15.b1)MSMg01-105P15.TJ (MSMg01no105_p15.g1)
ACCAG320185AG320186
length720714
length of high quality
(start - end)
410 (52 - 461)388 (74 - 461)
definitionCHROMAT_FILE: MSMg01no105_p15.b1 PHD_FILE: MSMg01no105_p15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:05:47 2005CHROMAT_FILE: MSMg01no105_p15.g1 PHD_FILE: MSMg01no105_p15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:05:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCTCTCTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTTTGTTTACCTCTGAGCCCCATTTTTAATGGGGTTATTT
GATTTTCTGGAGTCCACCTTCTTGAGCCCTCTCTATATATTGAATATTAG
TCCTCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTG
GCCTTTTTGTCTTATTTACAGTGTCTTTTGCCTTACAGAAGCTTGGCAAT
TTCATGAGGTCCCATTTGTCGATTCTCGATCTTACAGCACAAGCCATTGC
TGTTCTATTCAGGAATTTTTCCCCTGTGCCAATATCTTCGAGGATTTTCC
CCACTTTCTCCTCTATAAGTTTCAGCGCCTCTGATTTTATGTGGAGCTCC
TTGATCCACTTAGATTTGACCTTAGTACAATGGATCAATTCACATTCTTC
TACATGATAACCACCAGTCGTGCTAGCACCATTTGTTGAAAATGCTGTCT
TTTTTCAACTGGATGTTTTTAGCTCCCTTGTCGAAGACCATGTGACCGTA
CGTGTGTGGATTCATCTCACGCTCTTCTATTCTGTTCCATTGGCCTACTT
GTCTGTTGCCACACCATTACCCTGCAGATTTTATCTACAATTGCTCTGTA
GTACAGCTTTATCTCAGTTATGTTGATTCCACCTGAGTTTCTATTATTTC
TGATTAAATCTATCTGCCCN
CCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGAGGCCGTTTTTCCAAGCAGAGCAAT
TCAGTGAGAAGCTGAGAGAAGCCAGTTTGAATCAGTCAGTTTGGAGATGA
GTTTTGAACCAGAACAGCTGAGTTGAACTGGCCAGCCAGAGTTCAGAAAG
AACTAGAAAGAGTGAGCTTATTCAGCAGCAAACTGTCAAAGTGACAATAC
ATCTGGCAAATAAAAGTCACTTTCACATACCTTAATGACTCTGACATCCC
AAGAATACTCAAGAGGTTAGGAGAACAGGGGAGGGCATCTAGCAGTCTAT
TTATCAAAACTTGCCCATGCATGTTTTGTCTGTATAACTGGTGGTGTTAT
AATCAAGGGACTTGTATTAGCTACTTTTCTCATTGCTGAAGTTAAATACC
CAACCCAACCAGAAGCCATTCAAGAATGAGTGGGAGTATGCAAGCTTACA
ATTCATAGGGTACAACCCATTATAGCAAGGAAGACATAGTACCAGGCATG
TGAGGTGTCTAGGTACATTGCATCCACAGTCTGGAAGTATAGAGTGATGA
ATGCTGGTACTCTCATCACGCCCCTCTTTTATTCTATCCTCAACTCGAGT
TTATTGAACAGAGATACCCAAATTTAGGTGTCCATCTCAGTTGACTCCAT
TTACAAACTAGTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no105_p15.g1 MSMg01no105_p15.g1 CHROMAT_FILE:
MSMg01no105_p15.g1 PHD_FILE: MSMg01no105_p15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:05:47 2005
         (388 letters)



>mm_chr1_24856114_24856901
          Length = 788

 Score =  719 bits (372), Expect = 0.0
 Identities = 384/388 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaggccgtttttccaagcagagcaattcagtgagaagctgagagaagccagtttgaatc 60
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaggcagtttttccaagcagagcaattcagtgagaagctgagagaagccagtttgaatc 260

                                                                       
Query: 61  agtcagtttggagatgagttttgaaccagaacagctgagttgaactggccagccagagtt 120
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 261 agtcagtttggagatgagttttgaaccagaacagctgagttgaactagccagccagagtt 320

                                                                       
Query: 121 cagaaagaactagaaagagtgagcttattcagcagcaaactgtcaaagtgacaatacatc 180
           ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagaaagaactagaaagggtgaggttattcagcagcaaactgtcaaagtgacaatacatc 380

                                                                       
Query: 181 tggcaaataaaagtcactttcacataccttaatgactctgacatcccaagaatactcaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggcaaataaaagtcactttcacataccttaatgactctgacatcccaagaatactcaag 440

                                                                       
Query: 241 aggttaggagaacaggggagggcatctagcagtctatttatcaaaacttgcccatgcatg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggttaggagaacaggggagggcatctagcagtctatttatcaaaacttgcccatgcatg 500

                                                                       
Query: 301 ttttgtctgtataactggtggtgttataatcaagggacttgtattagctacttttctcat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttttgtctgtataactggtggtgttataatcaagggacttgtattagctacttttctcat 560

                                       
Query: 361 tgctgaagttaaatacccaacccaacca 388
           ||||||||||||||||||||||||||||
Sbjct: 561 tgctgaagttaaatacccaacccaacca 588


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 388
Length of database: 788
Length adjustment: 9
Effective length of query: 379
Effective length of database: 779
Effective search space:   295241
Effective search space used:   295241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)