BAC Information

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BAC

Clone NameMSMg01-106G13
Chromosome1 (Build37)
Map Location 143,364,806 - 143,365,437
singlet/doubletsinglet
Overlap genenone
Upstream geneKcnt2, EG226472
Downstream geneLOC639376
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-106G13.T7 (MSMg01no106_g13.b1)MSMg01-106G13.TJ (MSMg01no106_g13.g1)
ACCAG320503AG320504
length7071,677
length of high quality
(start - end)
637 (59 - 695)525 (102 - 626)
definitionCHROMAT_FILE: MSMg01no106_g13.b1 PHD_FILE: MSMg01no106_g13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:06:47 2005CHROMAT_FILE: MSMg01no106_g13.g1 PHD_FILE: MSMg01no106_g13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:06:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTACCCAANCAACTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXCGCGGAATTCTTTACTGATTTTATCTTTAGCAGGTATTGAAT
ATGCAGTCATAGGCATTTTGAGTTCATGGTGTGCTAATATCATGTCTAGA
ACTCACTGTTTGTTAGCAGTTCTCCACAATGTCTGGCTCTATGACATTTA
TGTCCCATATAGGCCTGTGCTTTTCATAGTCACTTACTGTCTGCATTTGA
CCAGTTATGTGGCTCTATGTGTTAACTACCATTCAGTCAATGCAGAAAGA
CACTTAGCTTAACACATCTTTAGATGAAAAATAAAACTATAGTGGGAATA
TTGATAAAATGAATTTTAGTAAATAACAGTAGTAGTTTTTCTGATAATGA
CCGTGACCCAATTAGCCATGGATTCTTTTCCCAATTACAGAACTAGGAAT
GGTTATTGTTTCATATAGCATGTGTTAAATCCAACCAAAATACAATTGTG
TGCATGTTTTGCATTTTTATAATTCACACAGTAGTTAACACACTTGAAGG
GCATTTTCAGTTACTAGGATTGTAAATATAAACTATTAAAAAAATCAATC
ACCTGGGACATTTAGCTTAATGGTGTTCATATATTTTGTACAATTTTTTC
ATTCTTACAGATTATTCTTTACTGAAATATAAATGATTAAAATATCAGTT
AGTTGTA
CTTCTCTTTTATTNAGAAGAGCGTNXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACTCTTGCACCTGTCCCATTATGATT
GTTTACTAGTTAGGCACAGCGGAGGCCCGTGCCATGCCATAATGGCGATT
GTTTGCGGCACACACGGTCTCTCCTCAGAGATTACTGGCAGCACGCACGC
GATTGCTCGCAGCACGTACCGGCTTTCCACACTTAGGGAACTAAAAATGA
TGTCAGAAGTGGGGAAGAGTAACTCTTCTGAAGTTTACCAGGAGCTGCTA
GAAAGAGCGGTGAGGCAGGCTCCTGGGAGAGGACAGAATACATCTGATAT
GCTAGCCTTTCTTGTGGTCGAGGTAGTTGATCAGCAAGATACTAGAGTCA
GACATTACCAGACTTTAGATTTCAAGTTGATAAAGGAGTTAAAAACAGCT
GTTGTGCAATATGGCCCTTCAGCCCCTTTCACTCAAGCATTACTGGATAC
AGTTGTAGAGTCACACTTAACCCCCCTAGATTGGAAGACTCTTTGTAAGG
CTACCCTGTCAGGAGGAGATTTTTTGCTTTGAGATTCTAAATGGCAAGAT
GCCAGTAAGAAAACTGCCGCTTTAAATGCCCAGGCTGGTAATTTAGACTG
AGATTAGCACATGCTTTTAGGAGAGAGTCCATATGAGGGACAGACAAATC
AGATTGATTTTTCCCCTTTGCAGTGTACACACAGATCGCAGCAGCTGCAT
GCTGTGCTTGGGGACTGTTACCAGTTAAAGGGTATACTGTTGAGAGTTTA
GCTAGCATTCCACAGATTTCTGATGAGCCTTACCTAAACTTTGTGGACAG
GCTTTTGATATAGGCTTAGTAAAATCTTTGAAAGTCAGACAGGGTAAGTC
CTTTCGTTATTCTCATAATATCTTTGTCTTATGAGATGCTAATGCACTGT
GCCAAAGTGCGATTCTCCGCCCAAAGTACAGATCGATTTGTTTAGATTTG
TCTGTCTTTGCACAAACTTTAGCCGTCTGGCTCACTTCTCAAAGTACCCA
TATTTTTAAAGCTTGTCTCTCATAATAATAAAAACTATGTTTTATATTAA
TTCTTATATCCTTTATATTTATTTTCTTATACAAAATTCTTCTATTGTTC
ATTATTCCCTCTCCTTTTATTTTTTCTTATAAATATTCTTCGTCTCATGG
TCTTATTCTAACTTTGTTTGTCCCTTCCTCTTTACTATACTATTCTACAT
CTCTCCACTTATTTACCTTTTTCTTCTTACTCTTCTTTTCTTTTTCAATT
TTTTTTATTCACTCTTTCTTTATTTATTTCACTTTGTTCTTCCCACTCTC
TCACTTTTCTTTTTCTGTTCTCCTCTCTCTTCACTCTCTCATCTTATTGT
TCTCTATCTATCTCTGTCTTATTCTTATCTATCTTCTTTAGCTTACTCAC
GTACCTTCTTCTTTCTTTTCCTTCCTCTCTACTATATTCTCCTTCCCATC
TCATATCGTATTATTCCTCTTCCTTCCTCTCTTCTTCTCTTATCCTATCT
CTTCCTTCCNTCTCTATTCTCCATTCTTTTTTCTATTTCTCTTATCTCCT
CTTATCTTCCTCTTTTAATCTTCAGCGTCTCTTATTCATTCATCTCTTTT
CTTGTTCTCCTATTCTATCTCTTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no106_g13.b1 MSMg01no106_g13.b1 CHROMAT_FILE:
MSMg01no106_g13.b1 PHD_FILE: MSMg01no106_g13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:06:47 2005
         (637 letters)



>mm_chr1_143364603_143365639
          Length = 1037

 Score = 1199 bits (620), Expect = 0.0
 Identities = 629/632 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctttactgattttatctttagcaggtattgaatatgcagtcataggcattttga 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctttactgattttatctttagcaggtattgaatatgcagtcataggcattttga 263

                                                                       
Query: 64  gttcatggtgtgctaatatcatgtctagaactcactgtttgttagcagttctccacaatg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gttcatggtgtgctaatatcatgtctagaactcactgtttgttagcagttctccacaatg 323

                                                                       
Query: 124 tctggctctatgacatttatgtcccatataggcctgtgcttttcatagtcacttactgtc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tctggctctatgacatttatgtcccatataggcctgtgcttttcatagtcacttactgtc 383

                                                                       
Query: 184 tgcatttgaccagttatgtggctctatgtgttaactaccattcagtcaatgcagaaagac 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tgcatttgaccagttatgtggctctatgtgttaactaccattcagtcaatgcagaaagac 443

                                                                       
Query: 244 acttagcttaacacatctttagatgaaaaataaaactatagtgggaatattgataaaatg 303
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 444 acttagcttaacacatctttagatgaaaaataaaaatatagtgggaatattgataaaatg 503

                                                                       
Query: 304 aattttagtaaataacagtagtagtttttctgataatgaccgtgacccaattagccatgg 363
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 504 aattttagtaaataacagtagtagtttttctgataatgactgtgacccaattagccatgg 563

                                                                       
Query: 364 attcttttcccaattacagaactaggaatggttattgtttcatatagcatgtgttaaatc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 attcttttcccaattacagaactaggaatggttattgtttcatatagcatgtgttaaatc 623

                                                                       
Query: 424 caaccaaaatacaattgtgtgcatgttttgcatttttataattcacacagtagttaacac 483
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 624 caaccaaaatacaattgtgtgcatgttttgcatttttaaaattcacacagtagttaacac 683

                                                                       
Query: 484 acttgaagggcattttcagttactaggattgtaaatataaactattaaaaaaatcaatca 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 acttgaagggcattttcagttactaggattgtaaatataaactattaaaaaaatcaatca 743

                                                                       
Query: 544 cctgggacatttagcttaatggtgttcatatattttgtacaattttttcattcttacaga 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 cctgggacatttagcttaatggtgttcatatattttgtacaattttttcattcttacaga 803

                                           
Query: 604 ttattctttactgaaatataaatgattaaaat 635
           ||||||||||||||||||||||||||||||||
Sbjct: 804 ttattctttactgaaatataaatgattaaaat 835


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1037
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1027
Effective search space:   643929
Effective search space used:   643929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)