BAC Information

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BAC

Clone NameMSMg01-106M22
Chromosome1 (Build37)
Map Location 162,639,217 - 162,639,785
singlet/doubletsinglet
Overlap geneRabgap1l
Upstream geneTnr, 4930523C07Rik, 4930562F07Rik, Tnn, Mrps14, Cacybp, Gpr52
Downstream geneEG620750, Rc3h1, Serpinc1, Zbtb37, Gas5, Dars2, Cenpl, Klhl20, Ankrd45, 4930469G21Rik, EG665117, EG640200, EG620839, Prdx6, Tnfsf4, Tnfsf18, EG435650
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-106M22.T7 (MSMg01no106_m22.b1)MSMg01-106M22.TJ (MSMg01no106_m22.g1)
ACCAG320791AG320792
length1,3041,252
length of high quality
(start - end)
320 (78 - 397)574 (93 - 666)
definitionCHROMAT_FILE: MSMg01no106_m22.b1 PHD_FILE: MSMg01no106_m22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:07:46 2005CHROMAT_FILE: MSMg01no106_m22.g1 PHD_FILE: MSMg01no106_m22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:07:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTATATATACATTCGCGCTATAGACTACTAAGGGAGAGGATCCGCGGAAT
TCTGAATAGCCAGAGCCTCCTTTAGGGTTCCAAGGTTCCAGAAGCCTATG
ATCTTGGAAACGCAGTAAGGAAGTTACCTATTCAGTAACTAATTAATGAT
TACAAAAGATGGAGCCAACAGCTCAGGGCTAGTCTGCAGAGTGTTTACCT
TGTAAGAGCCAGGGAATCCCACTGAGATAGAAATCTTCAGTACAGGATAC
ATTGCATATTAGAAGCAAGTTGGTGAATTCTCCTGACAAATGGAGATTCT
CCAGATACTTAAAAGTTACACTCATATAAGAATTTAGCAAGGCCTAGGAA
ATAGGGGGGTTGTGGTATTGCATTTTTCATGAGAAGGCCTGTAAGAGCAG
AACCCTTTGGTGCTAGTCTTCACAAGGCTCAAAGAAATAGCACTAGGGTG
TGAGATCCTTACCTGTCACTGAGCTGACCCTAGGCAGGACTGCTTTATCT
TTACTGTAAACATCTACCTGGTTCCTGTAAGTCCCTTTGTAGTCATTCCT
TTGTTTTGTATCAGGTAACTTCAATGTACTTTGCCTGCTGTTGACTTCCA
ACCCCTTTTATTTTCTGTACTATTTAAGACTGGTGTTCACTTTGTGAGAT
TACATTCAGATTCTACACAATCTCTCGTGTTGGTTTGTCTGTCACCCACT
GATGCCTTGCCCACCTGCGATCAGAGACTTGTTCCACGCAAACAAATGGA
CCCAGAGGTTCTGCTATACTCCAGTAGGAAAGATTTTCACCCAAAGATAA
AGCTTTATCTTTTGCCCTATGCATGTCATTTCTCAATTCATTTGCCTGCA
ATATTGTGGGAATGATTCTTTTCTTTTTGTTTGTGTTTGTTTTGTGTTTG
CAATTTTCATTTTTGTTTTTTGTGTTTTTTCCTGCTATACAAAAACCAAT
TACTTTCCCTGTGCCTCCTGGATATCATTTGGGGTGGTTAAATTTAAAAA
CCTTTTATCTTCCAACTTTGCTTCTTTTCAATTTTTACTAAATGTTTCTA
ATTAATTTTAAATCTCTTTCATTTAACACTAAACCTTTTAAAATGCCCAA
TTTTCTTCTATAATCCTATGCCTTTATTTTAAACATTTCCTCTCCCTTCT
GTTCTAACTTTTGCTTCTCTAGGTTATTTCTCGTGTTCAATAGTCTTTAA
GTGCTTTTCTTCTTTCAACCNTATATGTAACTAATTCTTTCTCTGGTCTC
CTTTGTGGATCTCATAGTGTCTTTATATATTCCTCTCTATCACTCTGTTG
TTAG
NCCCAGTTCTTTTTAAATCATGTGAGNCTGGGGXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTTTAAGATGGACTGGTCTA
CAGAAATAATTCCAGGACAACACCTTATACACAGAGACACTCTGTCTTGA
AAAACAACAAAAACAAAGAAACAAAGCAACAAAGCAACAAAAAAGATTAA
TGATACATACTCAGGTTAATGTTTGTTGTGAAGGTAGAAAGGCATTTTAA
CTCTTAAAGAGAAGTGCCTTCTGGTGCTGCTGTTAATGAACATTCACTTG
GTGATTTAGAATGTTGCAGAAATGGTAGAGGAAGCATAAAATTCCTTACT
TTGTGACTTTAATTTTTTATATTTTATATATTTCCCTTCAACAGTGTTTC
ATAAATATAATTTAAATATCATTGTGGGAAGTTTTTCTTTTAATTATTTC
ATGGTAACTATGTCAGCACTAATTTTCTAGCAATATTAGAACACATTATT
CAAACATTCGAGAACCTAGTTGTATGCCAAACACTATGTGATATATTGGG
GTTTTAGATTTGTGTGAAATATAGTTGTTTTTTTCTTTTTTTTGGACATT
TTCTTTATTTACATTTCAAATGTTATCCCTTTTCCTGGTCCTCCCTCCCG
AAACCTCCTATTCCCCCAATCCCCCTGCTTCTATGAGGGTGTTCCCCACT
CACTCACCCATTCCCACATCCCTACCCTGTCATTCCTCTACACTGGGACA
TCGAGCCTTTCACAGGAACAAGGTTCTCTCCCTCACATTGATGTCCCAAT
AAGGCCATCCTCTGCTACATATGTGGCTGGAGTCATGGTTCTCTCCATGT
GATTTCTTCCATTTTTTTTTTTACCTTTGTGAAATCCTGAAAGTGTCTGG
TTGGCCTGAAAATTGTTGTTCTTCCCAGGTAATTTTGTAAAACTCCTTTT
ATCTTCTTTCTATTCTTTTTTTCCTAATTCCTTGTATTTGTGGAATTTCT
TTGGTCTCCTTTCTAATGTTTGCGGTGCTAATTTAATCCAACTTCTGTAA
TTTTTCTACGTTTTTTGTCAAAATTCCTTTTTATAAATAAATTTATCCTT
TGAAATTTTTTAAATTCTCCTGTTATATTATTTTTATTTTTGCGTTATTT
CAATAATAACTTTATATTAACTATGTGGTGGTATCATTTCTGGTTCATTT
AGTAACCCACTCTGCGTGGTCTAATAATTTCCTCTTGTGTAACTCCTCTT
TT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no106_m22.g1 MSMg01no106_m22.g1 CHROMAT_FILE:
MSMg01no106_m22.g1 PHD_FILE: MSMg01no106_m22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:07:46 2005
         (574 letters)



>mm_chr1_162638812_162639785
          Length = 974

 Score = 1011 bits (523), Expect = 0.0
 Identities = 559/575 (97%), Gaps = 10/575 (1%)
 Strand = Plus / Minus

                                                                       
Query: 4   gtctacagaaataattccaggacaaca----ccttatacacagagacactctgtcttgaa 59
           |||||||||||||||||||||||||||        ||||||||||||||||||| |||||
Sbjct: 974 gtctacagaaataattccaggacaacaaggg----atacacagagacactctgttttgaa 919

                                                                       
Query: 60  aaacaacaaaaacaaagaaacaaagcaacaaagcaacaaaaaagattaatgatacatact 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 918 aaacaacaaaaacaaagaaacaaagcaacaaagcaacaaaaaagattaatgatacatact 859

                                                                       
Query: 120 caggttaatgtttgttgtgaaggtagaaaggcattttaactcttaaagagaagtgccttc 179
           |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 858 caggttaatgtttgttgtgaaggtagaaaggcatttcagctcttaaagagaagtgccttc 799

                                                                       
Query: 180 tggtgctgctgttaatgaacattcacttggtgatttagaatgttgcagaaatggtagagg 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 798 tggtgctgctgttaatgaacattcacttggtgatttagaatgttgcagaaatgttagagg 739

                                                                       
Query: 240 aagcataaaattccttactttgtgactttaattttttatattttatatatttcccttcaa 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 aagcataaaattccttactttgtgactttaattttttatattttatatatttcccttcaa 679

                                                                       
Query: 300 cagtgtttcataaatataatttaaatatcattgtgggaagtttttcttttaattatttca 359
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 678 cagtgtttcataaatataatttaaatatcactgtgggaagtttttcttttaattatttca 619

                                                                       
Query: 360 tggtaactatgtcagcactaattttctagcaatattagaacacattattcaaacattcga 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 618 tggtaactatgtcagcactaattttctagcaatattagaacacattattcaaacatttga 559

                                                                       
Query: 420 gaacctagttgtatgccaaacactatgtgatatattggggttttagatttgtgtgaaata 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 gaacctagttgtatgccaaacactatgtgatatattggggttttagatttgtgtgaaata 499

                                                                       
Query: 480 tagttgtttttttcttttttttggacattttctttatttacatttcaaatgttatccctt 539
           |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 498 tagttgtttttt-cttttttt-ggacattttctttatttacatttcaaatgttatccctt 441

                                              
Query: 540 ttcctggtcctccctcccgaaacctcctattcccc 574
           |||||||||||||||||||||||||||||||||||
Sbjct: 440 ttcctggtcctccctcccgaaacctcctattcccc 406


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 974
Length adjustment: 10
Effective length of query: 564
Effective length of database: 964
Effective search space:   543696
Effective search space used:   543696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)